Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq612 109 8e-19 seq1429 104 3e-17 >seq612 Length=73199 Score = 109 bits (120), Expect = 8e-19 Identities = 330/505 (65%), Gaps = 5/505 (1%) Strand=Plus/Plus Query 77679 GCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTC 77737 || ||||| || || || || || || ||||| | | ||| || |||| |||||||| Sbjct 23705 GCAATAGACGCAAGGTTGCACACAGCAACCTCGTCTGGCGC-GGTGTATTCGATTATCTC 23763 Query 77738 GGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 || || || || ||||| ||| || || || ||||| || || ||| | ||| Sbjct 23764 TGTGCAGAGGTTGCTACAAGAGATGGTCCCAAGGTTTTGCTGATTCGACTTCCTGTTGGC 23823 Query 77798 TGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTT 77857 |||||||| || || || ||||| | ||||| || || || | |||| || | Sbjct 23824 CGAGTCCTTGTACAGCATGTACGGATTACCGGTCTCTATTTGAGCCTCGAGGATGGCAAA 23883 Query 77858 CCAGACGACTCTAGCTTTTATCATAGATTTGT--ATCGCCTCTCTCT-TTCATATTGAGT 77914 ||| | || || || || | || | |||| | | |||||| | || Sbjct 23884 CCACAAATCTTGGGCCTTCATTGTCTTCCTGGCCAAGCCCTCAGTTTGTTCATACTTGGT 23943 Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 || | | || |||| |||||||| || ||| | | ||| ||| || ||||| Sbjct 23944 GTACAACTCCTCGAATTGTTCTCCCCAGACCTCAGCAAGTCCTTTAGCTTCGTTGGGGCA 24003 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 | | ||||||||||||| ||||| || || ||||| |||||||| || | ||| || Sbjct 24004 GAAGAGGGACCAGTCACCATTTTCCTCCACACGCTTCATGAAGAGATCTGGGACCCAAAG 24063 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAG 78094 || |||| ||||| | | || || || || || || ||||| ||||||||| Sbjct 24064 TGCGTAGAATAAGTCTCGCGCGCGATTCTCCTCCTTGCCGGTGTTCTTGCGAAGATCGAG 24123 Query 78095 AAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTT 78154 || ||||| |||| |||||| ||||| || || | ||| | |||| ||| || Sbjct 24124 GAAAGATATAATGTCAGCATGCCAGGGTTCCAGGTAAACTGCAAAGGCTCCCTTTCGCTT 24183 Query 78155 ATTACCTCCCTGATCTATATATCTG 78179 ||||| || || | ||||||| Sbjct 24184 GCCGCCTCCTTGGTCAACATATCTG 24208 >seq1429 Length=23345 Score = 104 bits (114), Expect = 3e-17 Identities = 126/171 (74%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATC 48320 || || ||||| || |||||||| ||||||||| | | || | || | ||||| Sbjct 7528 ATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCAAAGCTTCCCTCTT---GTATC 7584 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 |||| |||||||||||||||||||||| |||||||| ||||| || |||||||| || Sbjct 7585 CACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATAGCATTGAAC 7644 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 || || |||||| | | ||| | ||| || || || ||||||||| Sbjct 7645 AGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACTA 7695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/288 (68%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||||||||| ||||| || || || ||||| ||||| || | || || | |||| Sbjct 7476 TCGGAGTGAATATTCTCAATGGCGATTTGGAATCCATAAAAGCAGCGAGCCTCAGGGATC 7417 Query 48498 TGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 |||| || | | || || || || | |||||||| || ||||||||||| ||||| Sbjct 7416 TGTA-CTTCTTGCATGAAACGAGTTGCAAGGTTCTCATTCACAATTCCATCACTGGCAGC 7358 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT---CCA 48613 ||| || || | ||| || || | ||| || | | | | ||||| || ||| Sbjct 7357 AAAGAAAGCAAGGACACTGGAGATGAAGTGTTTCTCATCCGCATTGAGTTTCTTTTCCCA 7298 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 ||| | ||| | || |||| || || || ||||| || ||||| |||| Sbjct 7297 GTCGACTAAGTCTGATTGTAAGTCTATCTCCTCCGCGGTCCAGAAGCTGGCCTCAGCTTG 7238 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || ||||| ||||||| ||| || | ||| ||||| | ||||| Sbjct 7237 CTTGTACATTTTCCATACTTCATGGTGCTTGATGGGGAAGAGCACAAA 7190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694063682691680