Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1429 100 4e-16 >seq1429 Length=23345 Score = 100 bits (110), Expect = 4e-16 Identities = 125/171 (73%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATC 46809 || || ||||| || || ||||| ||||||||||| | | || | || | | ||| Sbjct 7528 ATACCCTCTACCGCTGCAAATGCTACAAGTCTCTCAGCAAAGCTTCCCTCTT---GTATC 7584 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 ||||| | |||||||||||||| ||||| |||||||| ||||| || |||||||| || Sbjct 7585 CACCTCAGTGCCCAATCAGCCTTCTTCTTCACACAAGGGATTGTCTCAATAGCATTGAAC 7644 Query 46870 AGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 || || |||||| | | ||| | ||||| || || ||||||||| Sbjct 7645 AGTCTGTCTTTTTCTTGTGGGTTTTTGATGTATGTGTCGATCAAAAGACTA 7695 Score = 91.5 bits (100), Expect = 2e-13 Identities = 195/288 (68%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || ||||| || ||||| || || || ||||| ||||| || | || |||| ||| Sbjct 7476 TCGGAGTGAATATTCTCAATGGCGATTTGGAATCCATAAAAGCAGCGAGCCTCAGGGATC 7417 Query 46987 TGTACCTCTGTACAA-AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 ||||| ||| | || || || | | ||||||||||| ||||||||||| ||||| Sbjct 7416 TGTACTTCT-TGCATGAAACGAGTTGCAAGGTTCTCATTCACAATTCCATCACTGGCAGC 7358 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT---CCA 47102 ||| || || | ||| || || | ||| ||||| | | | ||||| || ||| Sbjct 7357 AAAGAAAGCAAGGACACTGGAGATGAAGTGTTTCTCATCCGCATTGAGTTTCTTTTCCCA 7298 Query 47103 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTT 47162 ||| | ||| | || |||| || || || |||||||| ||||| |||| Sbjct 7297 GTCGACTAAGTCTGATTGTAAGTCTATCTCCTCCGCGGTCCAGAAGCTGGCCTCAGCTTG 7238 Query 47163 TTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || ||||| ||||||| ||| | | | ||| || || | ||||| Sbjct 7237 CTTGTACATTTTCCATACTTCATGGTGCTTGATGGGGAAGAGCACAAA 7190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712313371755840