Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq6039 318 2e-82 seq8210 174 4e-39 seq3196 158 3e-34 >seq6039 Length=3328 Score = 318 bits (352), Expect = 2e-82 Identities = 560/803 (70%), Gaps = 31/803 (4%) Strand=Plus/Plus Query 9724 CAGGCCGATGAACGATACGGAGCTCGTCGCTGAAATCCAGCA-ACAAGTCAGCGAACTGC 9782 |||| |||| ||||| | | ||| ||| ||||| | || || | ||| || |||| Sbjct 5 CAGGAAGATGGACGATGCCGGGCTGCTCGAAGAAATACGGCTGACCA-TCACTGACCTGC 63 Query 9783 CCAGCTACGGTTACCGCCGTGTTTGGGGATTGCTGCGCCGCGCGCGCGAAAAGCAGT-CG 9841 | ||||| ||||| ||||| || ||||| || |||| || ||| || || ||| || Sbjct 64 CGAGCTATGGTTATCGCCGGGTCTGGGGTATGTTGCGTCGGCAGCGGGAGAACCAGAGCG 123 Query 9842 CTGCCCGCGATCAACGTAAAACGGGTTTACCGAGTCATGCGTGATCACAACCTGCTGCTT 9901 | |||| || |||| | |||||||| ||||| || ||||| | |||| ||| ||||| Sbjct 124 CGGCCCCCG-TCAATGCCAAACGGGTGTACCGGGTAATGCGCGTTCACGGCCTCCTGCTA 182 Query 9902 GAGCG----GCGCATCAAGCA-GCCCGGCGTACCGCGCCGGCATGAAGGCCGTATCGCCG 9956 |||| |||| | || | ||| | |||||||||||| ||| |||| | Sbjct 183 CAGCGCAAAGCGCTCCCTCCACGACCG-----CAGCGCCGGCATGATGGCAAGGTCGCGG 237 Query 9957 TTAACACCAGCGACACGCGCTGGTGCTCGGATGGCTTCGAATTCCGCTGCGACGACGGTG 10016 | | ||| || ||||||||||||||| ||||| || || || |||||| | |||| Sbjct 238 TGGCGAAAAGCAACCAGCGCTGGTGCTCGGACGGCTTTGAGTTTCGTTGCGACAATGGTG 297 Query 10017 CGAAACTGAGCGTGACCTTTGCCCTGGACTGCTGTGATCGCGAAGCCATCGGCTGGGTGG 10076 | ||| | || || || || ||||| |||||||| || ||||| || ||||||||| Sbjct 298 AGCCGCTGCGTGTCACGTTCGCTCTGGATTGCTGTGACCGTGAAGCGATGAGCTGGGTGG 357 Query 10077 CCAGCCCGACCGGCTACAGCGGCGATGACATACGCGACTTGATGCTGGAAAGCGTGGAGA 10136 | | | ||| |||| ||||| | | || ||| | ||||| | | ||| |||| Sbjct 358 CGACAACTGGTGGCCACAGTGGCGACGTGGTGCGTGACGTCATGCTAGCAGCCGTCGAGA 417 Query 10137 AGCGTTTTGGCGACCTACTGCCGACCACACCGG------TGCAATGGCTAAGCGATAACG 10190 |||| |||||| || | | ||| |||||| | ||||||| | || |||| Sbjct 418 AGCGCTTTGGCAACGTCC---CGAAGGCACCGGCTGAAATTGAATGGCTGACGGACAACG 474 Query 10191 GTTCGGCCTACATCGCTGAACAGACGCGCCTGTTTGC-TC-GACAGATTGGCCTACAGCC 10248 | || | ||||| || || | || | ||||| || |||| |||| | | || Sbjct 475 GCTCAGGCTACACGGCGGAGAAAACCAGGACCTTTGCGTCTGACA--TTGGTTTGAAACC 532 Query 10249 AGTGACCACGCCGGTACGCAGCCCGCAGAGCAACGGCATGGCAGAGAGCTTCGTTAAGAC 10308 ||||||| ||||| |||||||||| || |||||||||||||| |||||||| || || Sbjct 533 GTTGACCACACCGGTGTGCAGCCCGCAAAGTAACGGCATGGCAGAAAGCTTCGTGAAAAC 592 Query 10309 AATCAAGCGCGACTACGTGGCGCACATGCCCAAGCCGGATCGAGAGACAGCCTTGCGCAA 10368 || ||||| ||||| || || |||||| ||||| ||| | || || |||||| Sbjct 593 GATGAAGCGTGACTATGTCGCCTTCATGCCGAAGCCAGATGCCGCAACCGCAGCGCGCAA 652 Query 10369 CCTGACGATTGCCTTCGAGCATTACAACGAGCAGCATCCGCACAGCGCCTTGAAATACCG 10428 || | | || ||||||||||||||||||||||| || || ||||| |||| ||||| Sbjct 653 TCTCGCCGTCGCGTTCGAGCATTACAACGAGCAGCACCCTCATAGCGCGCTGAAGTACCG 712 Query 10429 CTCGCCGAGGGAATTCAGGCGCTTGGCAGCAGCATCAATTTAACGGGGAGTTGGTGTCCG 10488 |||||| | || ||||||||| | | | |||||| | || | ||| |||||| | Sbjct 713 CTCGCCACGCGAGTTCAGGCGCAGGACCGATTCATCAACTCAAGTGTGAGGCGGTGTCTG 772 Query 10489 GTTTGGT--AGGGGCAAGTCCAC 10509 | ||| |||||||| ||||| Sbjct 773 G--AGGTACAGGGGCAAATCCAC 793 >seq8210 Length=1946 Score = 174 bits (192), Expect = 4e-39 Identities = 238/328 (73%), Gaps = 7/328 (2%) Strand=Plus/Minus Query 9189 GCCCCCTGAAAGACAGGACACCGTTTCCCCCTTACGATAAGGGATAGGCAAACGGTTATG 9248 |||||||||| | |||||| ||||||| |||| ||| || |||||| ||| | || Sbjct 342 GCCCCCTGAATCGCCGGACACAGTTTCCCACTTAAAATAGCGGGTAGGCATACGACTGTG 283 Query 9249 TTTATGACTAACAGCAACGACAAGA-GCGGTG-AGCTATTG---GGTCAGGAGCGGCGGC 9303 ||| ||||||||| ||| |||||| | | || | | ||| || | ||| || |||| Sbjct 282 TTTTTGACTAACAACAA--ACAAGAAGTGATGGAAGTGTTGACGGGACCGGAACGCCGGC 225 Query 9304 GCCGCTGGAGCCCAGAGCAAAAGCTGGCGATGGTTCGCGAGAGCCTTGAGCCAGGACACA 9363 | || ||| | || | |||||||||||||| | ||||| | ||||| || | Sbjct 224 GGCGGTGGTCAGCGGAAGAGAAGCTGGCGATGGTGAGAGAGAGTTTCGAGCCGGGCAAGT 165 Query 9364 GCGTTTCGGTGGTGGCCCGGCGCAACGGCGTCAATGCCAATCAACTATTTCACTGGCGCA 9423 || ||| |||| || || | ||||||| ||| | || || || ||||||||||||| Sbjct 164 CGGTCTCGATGGTTGCACGCCAGCACGGCGTGAATCCGAAACAGCTGTTTCACTGGCGCA 105 Query 9424 AGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGCCGTGGTGCCTGCGT 9483 |||| || ||||| || || ||||||| ||||| ||||| || | || || || |||| Sbjct 104 AGCTGTATCAGGATGGCAGCCTGTCGGCTGTCAGTGCCGGCGAGGAAGTCGTACCAGCGT 45 Query 9484 CCGAGTTGAGCGATGCGCTCAGGCAGAT 9511 | ||| ||||||||||||| | ||| || Sbjct 44 CGGAGCTGAGCGATGCGCTGAAGCAAAT 17 >seq3196 Length=8014 Score = 158 bits (174), Expect = 3e-34 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 37419 TGTCGCCGGAGGTGATCAAGTGAGCACGATCATCATGTCGGCCTGCTGGCCTCTCCAGGG 37478 || || | ||||||| ||||||||||| |||||||||||||||||||| ||||| || Sbjct 3715 TGCCGGCTGAGGTGACTGCGTGAGCACGATGATCATGTCGGCCTGCTGGCCGCTCCAAGG 3774 Query 37479 CATGAGCCCCGCACAGAAGGCGGTGCTGATCTCGCTGGCAGACCAGGCGAACGATCAGGG 37538 ||| | ||||||||||| |||||||||||||| || || | |||||||| ||||| Sbjct 3775 AATGTCTCTGGCACAGAAGGCCGTGCTGATCTCGCTCGCCGATAACGCGAACGACCAGGG 3834 Query 37539 CGTGTGCTGGCCGGCTGTGGACAGCATAGCGACGCGTTGCTGCCTGTCGAAACGCGCGGT 37598 ||||||||||||| | | | | || | || ||| ||| || | |||||||| Sbjct 3835 CGTGTGCTGGCCGTCCATCGCAACGATCGGGAAGCGGATTTGCGCATCCGAGCGCGCGGT 3894 Query 37599 GCAGCAGGCCATCAAGTGGCTG 37620 |||| | ||||||||||||||| Sbjct 3895 GCAGAACGCCATCAAGTGGCTG 3916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138250298544666