Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physarum_20polycephalum_20[genbank_20GCA_5F000413255.3_202014-06-30] 69,687 sequences; 205,175,886 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq146 131 4e-25 seq2782 129 1e-24 seq22 127 5e-24 seq59190 120 7e-22 seq30454 100 7e-16 seq6776 95.1 3e-14 >seq146 Length=178297 Score = 131 bits (144), Expect = 4e-25 Identities = 155/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| ||||| |||||||| |||| | || | ||||| || | Sbjct 157382 CAAG-TGGAGGGTGGACTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGA 157440 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| || | || ||||| | | ||||| ||||| ||||| Sbjct 157441 GTTGCTTT--CCGGCGAAGATGAGGCGTTGTTGGTCAGGGGGAATTCCCTCCTTGTCTTG 157498 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||| || || || |||| | | |||| || ||||| ||||| ||||||||||| || Sbjct 157499 AATCTTAGTCTTTACGCTCTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTAATAGTCTT 157558 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| ||||| ||||| ||||||| ||| Sbjct 157559 GCCAGTGAGGGTCTTAACGAAGATCTG 157585 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||||||||| |||| | || | Sbjct 156633 GAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 156692 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| ||||| || || |||||||| | | || ||||| | | ||||||||| Sbjct 156693 TCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTC 156752 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||||| ||| | | | || || |||||||| |||||||| Sbjct 156753 CTTGTCCTGGATCTTGGTCTTGACAGACTCGATGGTATCGGAGCTCTCTACCTCAAGAGT 156812 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || || || || ||||| ||||| ||||||| ||| Sbjct 156813 GATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTG 156848 Score = 104 bits (114), Expect = 5e-17 Identities = 146/204 (72%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| |||||||||||||| |||| | || | ||||| || | Sbjct 157059 CAAG-TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCATCCTCGA 157117 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || | | || ||||| | | |||||||||||| || || | Sbjct 157118 GTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCGGGGGGGATTCCTTCCTTGTCCTGGA 157177 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | ||| | | |||| || ||||| || |||||||| || || || | Sbjct 157178 TCTTGGTCTTGACGGACTCGATGGTGTCGGAGCTCTCGACCTCAAGAGTGATGGTCTTTC 157237 Query 152077 CCGTGAGAGTCTTCACGAAGACCT 152100 | ||||| ||||| ||||||| || Sbjct 157238 CAGTGAGGGTCTTGACGAAGATCT 157261 >seq2782 Length=10868 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || |||||||||||||| | | || | ||||| |||| Sbjct 9784 CAAG-TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTACGTCCATCCTCTA 9842 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || ||||| |||||||| | || ||||| | | ||||||||||| || || | Sbjct 9843 GTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGAATTCCTTCCTTGTCCTGGA 9902 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | ||| | | ||||||| ||||| || || || || || || |||| Sbjct 9903 TCTTGGTCTTCACGGACTCGATGGTGTCTGAGCTCTCCACCTCGAGGGTGATGGTCTTGC 9962 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||||||||| |||||| Sbjct 9963 CAGTGAGTGTCTTCACGAAGATCTGCAT 9990 Score = 100 bits (110), Expect = 7e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || ||||||||||| |||| | || | Sbjct 8831 GAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 8890 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||| ||||| | | || ||||| | | ||||||||| Sbjct 8891 TCCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGGTCAGGGGGGATTCCTTC 8950 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || || | ||| | | |||| || ||||| || || | || Sbjct 8951 CTTGTCCTGGATCTTCGTCTTCACGGACTCAATGGTGTCAGAGCTCTCGACCTCCAAGGT 9010 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 ||| ||||| || ||||| ||||| ||||| | || || |||| Sbjct 9011 AATGGTTTTACCAGTGAGGGTCTTGACGAAAATCTACAATTTA 9053 Score = 96.9 bits (106), Expect = 8e-15 Identities = 144/201 (72%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| || |||||||| || || | | || | ||||| || | Sbjct 9467 CAAG-TGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGAGAGGGTACGTCCATCCTCGA 9525 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| | | || ||||| | | ||| |||||||| || || Sbjct 9526 GTTGCTTT--CCAGCGAAGATCAAACGTTGTTGGTCAGGGGGGATGCCTTCCTTGTCCTG 9583 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || ||| ||||| | ||| | | |||| || ||||| || || | || || || || Sbjct 9584 GATCTTTGTCTTGACGGACTCAATGGTGTCCGAGCTCTCCACCTCCAAGGTGATCGTCTT 9643 Query 152075 GCCCGTGAGAGTCTTCACGAA 152095 ||||||||| ||||| ||||| Sbjct 9644 GCCCGTGAGGGTCTTGACGAA 9664 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || |||||||| || ||||||||||| | | || | || || |||| Sbjct 9164 CAAG-TGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGAAAGGGTACGTCCGTCCTCTA 9222 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || || ||||| || | || ||||| | | |||||||||||| || || Sbjct 9223 GTTGCTTT--CCAGCAAAGATGAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCCTG 9280 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || || | ||| | | | || || ||||| || || | ||||| || || Sbjct 9281 GATCTTAGTCTTTACGGACTCGATGGTATCAGAGCTCTCGACCTCCAAGGTAATTGTCTT 9340 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATTTTA 152108 || ||||| ||||| ||||| | || || ||| Sbjct 9341 ACCAGTGAGGGTCTTGACGAAAATCTAAATATTA 9374 >seq22 Length=338851 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| || ||||||||||| |||| | || | ||||| || | Sbjct 331887 CAAG-TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGA 331945 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||||||||| | || ||||| | | |||||||||||| ||||| | Sbjct 331946 GCTGCTTGCCAGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGGA 332005 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| || || |||| | | | || || ||||| || || | || ||||| |||| Sbjct 332006 TCTTTGTCTTCACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAACGTTATAGTCTTGC 332065 Query 152077 CCGTGAGAGTCTTCACGAAGACCTG 152101 | ||||||||||| ||||||| ||| Sbjct 332066 CAGTGAGAGTCTTGACGAAGATCTG 332090 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||| || ||||| || || |||||||| || | | || || ||||| Sbjct 332216 GAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTCCTTCCATC 332275 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || || | || ||||| | | |||||| ||||| || Sbjct 332276 CTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGGTCAGGGGGGATTCCCTCCTTGTC 332335 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| |||| | |||| || ||||| || || | |||||| || Sbjct 332336 CTGGATCTTAGTCTTGACACTCTCGATAGTGTCAGAGCTCTCGACCTCCAAAGTAATGGT 332395 Query 152072 TTTGCCCGTGAGAGTCTTCACGAA 152095 || || ||||||||||||||||| Sbjct 332396 CTTTCCTGTGAGAGTCTTCACGAA 332419 Score = 109 bits (120), Expect = 1e-18 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCG 151970 ||| |||||||||||||| |||| | || | || || || || ||||| |||||| Sbjct 330930 CTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCGAGCTGCTTT--CCGGCG 330987 Query 151971 AAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGAC 152029 ||||| |||| | || ||||| | | |||||||||||| || || || || || || Sbjct 330988 AAGATCAAGCGT-TGTTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCAC 331046 Query 152030 AGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTT 152089 | |||| | | | || || ||||||||||| || || || || ||||| || | ||||| Sbjct 331047 ACTCTCGATGGTATCGGAGCTCTCTACTTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTT 331106 Query 152090 CACGAAGACCTG 152101 |||||||| ||| Sbjct 331107 CACGAAGATCTG 331118 Score = 107 bits (118), Expect = 4e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || ||||| ||||| || ||||| |||| | || | ||||| || || ||||| | Sbjct 331333 GTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCGTCCATCCTCGAGTTGCTTT--C 331390 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 ||||||||||||| | || ||||| | | |||||||||||| ||||| || ||| | Sbjct 331391 CGGCGAAGATAAGGCGTTGTTGGTCAGGGGGGATTCCTTCCTTGTCTTGGATCTTTGTCT 331450 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 | || |||| | | | || || ||||| || || | || || || || || ||||| | Sbjct 331451 TCACGCTCTCGATGGTATCAGAGCTCTCGACCTCCAAGGTGATGGTCTTTCCGGTGAGGG 331510 Query 152086 TCTTCACGAAGACCTGCATT 152105 |||| ||||||| |||||| Sbjct 331511 TCTTGACGAAGATTTGCATT 331530 >seq59190 Length=243 Score = 120 bits (132), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| |||||||||||||| || | | ||| | ||||| Sbjct 243 AGCACGAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTACGTCCATCC 184 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | ||| ||||| | | |||||| || || | Sbjct 183 TCGAGCTGCTTT--CCAGCGAAGATGAGACGCTGTTGGTCGGGAGGGATTCCCTCTTTGT 126 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || |||||| |||| | |||| || ||| || ||||| ||||| | Sbjct 125 CTTGGATCTTGGTCTTGACACTCTCGATAGTGTCAGAGGACTCGACCTCAAGGGTAATTG 66 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| ||||| ||||| | |||||| Sbjct 65 TCTTACCCGTGAGGGTCTTGACGAAAATCTGCAT 32 >seq30454 Length=461 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| || ||||| ||||| || ||||| |||| | || | Sbjct 22 GAGGCGGAGCACCAAGTGAAGGGTGGACTCCTTTTGAATATTGTAGTCGGAGAGGGTGCG 81 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || ||||| | | || ||||| | | |||||||| Sbjct 82 TCCATCCTCGAGCTGCTTGCCAGCAAAGATCAAACGTTGTTGGTCAGGGGGAATTCCTTC 141 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || || || | ||| | |||| || ||||| || ||||| || Sbjct 142 CTTGTCCTGAATCTTGGTCTTTACTGACTCGATAGTGTCAGAGCTCTCAACCTCAAGGGT 201 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 |||||| || || ||||| ||||| ||||||| || || Sbjct 202 AATAGTCTTACCAGTGAGGGTCTTGACGAAGATCTACA 239 >seq6776 Length=2740 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | || | || || Sbjct 1424 AGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCCTCC 1365 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||||| || ||| || ||||| || Sbjct 1364 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 1305 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | |||| ||| || || || | || || Sbjct 1304 TGGATCTTGGCCTTCACATTCTCGATCGTGTCGCTCGGCTCCACCTCCAGCGCGATCGTC 1245 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||||||||||| |||||| Sbjct 1244 TTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152790594151977