Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq697 131 4e-25 seq1202 98.7 2e-15 seq433 98.7 2e-15 seq329 98.7 2e-15 seq235 98.7 2e-15 seq112 98.7 2e-15 seq65 98.7 2e-15 seq43 98.7 2e-15 seq1 98.7 2e-15 seq98 93.3 9e-14 seq41 93.3 9e-14 seq37 93.3 9e-14 seq29 84.2 5e-11 >seq697 Length=10231 Score = 131 bits (144), Expect = 4e-25 Identities = 556/854 (65%), Gaps = 22/854 (3%) Strand=Plus/Plus Query 229759 TTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGG 229818 ||||||||| || | ||||| ||| | |||||||| | || | || | ||| ||| Sbjct 5371 TTCCCAATCAAACACAATGATATATGGAAGATGTACAAACAAGCTGAAGCCAGTTTTTGG 5430 Query 229819 ACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGAC 229878 || | || ||| || | || |||| || ||| ||| ||||| | ||||| Sbjct 5431 ACAGCCGAAGAAATTGATTTGGCACCAGATCTCAACGATTGGAACAAGAAATTAAATGAT 5490 Query 229879 GACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTG 229938 |||||||| ||||||| | | | | |||||||| | | ||||||||||| Sbjct 5491 AACGAACGTTATTTCATATCCAATGTTTTGGCCTTTTTCGCTGCCAGTGATGGTATTGTC 5550 Query 229939 ATGGAAAATCTGCAGACCAACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAATT 229997 | |||||||| || || |||| || | ||||| |||||||||| | || Sbjct 5551 AATGAAAATCTTGCCACAAAGTTTA-TGAGTGAAGTTCAAATTCCAGAGGCTAGATGTTT 5609 Query 229998 TTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGA 230057 |||| | ||||| || ||| |||||||| || || ||| | ||||| Sbjct 5610 CTATGGCTTCCAAATTGCCATTGAAAACATCCATTCAGAGACCTACAGTCTCTTGATCGA 5669 Query 230058 CGCGCTTATTTCC--GACGAGCAAG-AACGGAACGAGCTTTTTGATGCCATTGAAAACAT 230114 | | || ||| ||| ||| | || || | | || || | ||||| || | ||| Sbjct 5670 CACC--TACATCCAAGAC-AGCGTGGAAAAGAGCAAACTATTCAACGCCATCGAGACCAT 5726 Query 230115 CCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCT-AGAACCTGGTAAATCGT 230173 ||| || | || ||||| | ||||| || |||| | | | | | ||||| | Sbjct 5727 CCCCTGTGTGAAAAAGAAGGCCGACTGGGCATTGAGATGGATCACCAACAGC-AAATCAT 5785 Query 230174 TTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTC--CGGGAGTTT 230231 ||||||| ||| | || |||| | || || ||||| || ||||| ||| ||||| Sbjct 5786 TTGCCGAACGTTTAGTTGCCTTTGCCGCCGTCGAGGGTAT-CT-TTTTCAGCGGCAGTTT 5843 Query 230232 CTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 230291 ||| | ||||||||||| ||| ||| ||||||| || | | |||||||| Sbjct 5844 TTGCTCTATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCTCTAACGA 5903 Query 230292 GTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAAAGC 230350 | |||||||||| |||||||||||||| | || | || | || |||| || ||| Sbjct 5904 GCTCATCAGTCGTGACGAGGGTCTCCA-CTGCAACTTTGCCTGTTTGTTGTACTCCAAGT 5962 Query 230351 TCCAGAACAAGCTACCAT-TCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | ||||| || | || | |||| || || ||||| | ||| || |||| | Sbjct 5963 TGGTCAACAAACT-CGATGCCAAGACCATCGAAACCATCATCAGAGACGCCGTTGCCTGC 6021 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTGAACT 230468 ||||| ||||| | |||||| | |||| |||| ||| ||||| |||||| | Sbjct 6022 GAAAAAGAGTTTGTCTGTGACAGTCTTCC-CGTCGACTTGATTGGTATGAACTCGCGTTC 6080 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGT-TGCACTTGGTTACGAGA 230527 ||| ||||||||| ||||| |||||| | ||| | | | || || ||| | | Sbjct 6081 CATGTCACAGTACATTGAATTTTGTGCCGACAG-ATTACTCTACACCCTCGGCTACAAAA 6139 Query 230528 AAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGA 230587 | | |||||| || || || |||| | ||||| | ||||| || ||| | || | Sbjct 6140 AGATCTACAACGCTCCCAATCCATTTGATTGGATGGAAATGATTTCCCTCCAAAGAAAAA 6199 Query 230588 CCAACTTCTTCGAA 230601 | ||||| |||||| Sbjct 6200 CAAACTTTTTCGAA 6213 >seq1202 Length=2188 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 1837 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 1778 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1777 CCCACGTTGGGC 1766 >seq433 Length=20731 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 20565 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 20624 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20625 CCCACGTTGGGC 20636 >seq329 Length=25976 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 20929 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 20988 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20989 CCCACGTTGGGC 21000 >seq235 Length=35100 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 19456 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 19515 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19516 CCCACGTTGGGC 19527 >seq112 Length=51867 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 20907 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 20966 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20967 CCCACGTTGGGC 20978 >seq65 Length=67928 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 6853 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 6912 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6913 CCCACGTTGGGC 6924 >seq43 Length=77804 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 65956 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 66015 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 66016 CCCACGTTGGGC 66027 >seq1 Length=175892 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||| Sbjct 137509 GCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGC 137568 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 137569 CCCACGTTGGGC 137580 >seq98 Length=57420 Score = 93.3 bits (102), Expect = 9e-14 Identities = 289/439 (66%), Gaps = 10/439 (2%) Strand=Plus/Minus Query 281595 CCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGT 281654 |||||||| || ||||| ||||| | | || ||||| || ||||| |||| || Sbjct 16977 CCAATACCTTCAGAGCCATTGACCAATACCATTGGAATAATTGGAACATAGAATTCCGGC 16918 Query 281655 TCAATTTTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCTGTATCGACGAAA 281714 | ||| ||||||| || || | ||| || || | || |||||| || | | Sbjct 16917 TGAATGCTATCACCTTCCTCTTCCAAGTAGTTTAAGAGAGGATCATCGAGTTCATTGTAT 16858 Query 281715 ACCTGTCG--CGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTT 281772 | |||| || | | | || || ||||| || || |||| || ||| ||| Sbjct 16857 AAATGTCTAACGAC--ACTCTCTAGCTTTGTGAAAATGTATCTTGGGCTAGCGCAATCTG 16800 Query 281773 TACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTT-AATGTTATTG 281831 |||||| || || | | ||||| ||||| |||||| | ||| ||||||||| Sbjct 16799 AACCACCTTGAAGACGAGTACCAAATTGACCA-CCGGCATATAATAGTGGAATGTTATTT 16741 Query 281832 CTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGG 281891 || || || || |||| || || ||||| | | || || | ||||| ||| Sbjct 16740 GATCCAACATAGCTTTGTGCCATCTTTACAATTGTAGCATTGAGGGAAGCTTCACCATGG 16681 Query 281892 TGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTC 281951 |||||||| | ||||| |||||||||||| || || || || || | || || || Sbjct 16680 TGATAGGCAGTATGTTCAGCAACATAACCAGACAATTGAGCAACTTTAATTTCAGAGGTT 16621 Query 281952 AAGTTGCGTTTGAAAGC--GCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAA 282009 | || | ||| |||| || ||| |||| ||||| ||| ||||||| |||||||| Sbjct 16620 AGCTTTCTCTTG-AAGCATGC-ATACAATATTTTTCTTTGGCCTGGCTTGAGACCATCAA 16563 Query 282010 CGACAGACGGAATGCTGCG 282028 || || || ||||| || Sbjct 16562 TGATGGAGGGTATGCTACG 16544 >seq41 Length=78064 Score = 93.3 bits (102), Expect = 9e-14 Identities = 245/374 (66%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || ||| || ||||| || |||||||| |||| ||| | || | || Sbjct 28514 CAAGCCTCCACCAGTGAGCTCTATGGCAAGGTTCAAGAGGTTCCACAATCCGAGACCACC 28455 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || ||||| ||| || || | | |||| |||| || || |||||||| | Sbjct 28454 CCATTCTATCCCCGTTCACCATACGCTCTTGCCAAACAATTTGCCTACTGGATCTTGGTC 28395 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGT 61268 || || || || | || |||| | || ||| ||| || |||||||| | Sbjct 28394 AACTATCGTGAAGCCTACAACATGTACGCCTGCAACGGTATTCTCTTTAATCACGAATCT 28335 Query 61269 CCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTTT 61328 || | ||||||| ||||| ||||||||||| || | || ||| |||| | Sbjct 28334 CCAAGAAGAGGTCCCACTTTTGTCACTCGTAAAATCACTAGATTCGTGGCACGTATTGCT 28275 Query 61329 AACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATAT 61388 ||| | || || | ||||| || ||||| | | || | |||||||| || Sbjct 28274 CTTGGTCACAAAGAAGTACTCTATCTCGGCAACATCTATGCCCAACGTGATTGGGGCCAT 28215 Query 61389 GCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTAC 61448 || |||| ||| |||| | |||||| | ||||| |||||||| | ||||| || || Sbjct 28214 GCCAAAGACTATGTCGAAGGAATGTGGCTCATGTTACAACAAGACAAACCAGAAGATTAT 28155 Query 61449 GTTATTGCGACTGG 61462 ||| | || || || Sbjct 28154 GTTTTGGCCACCGG 28141 >seq37 Length=80241 Score = 93.3 bits (102), Expect = 9e-14 Identities = 245/374 (66%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || ||| || ||||| ||||| ||||| |||| || | || | || Sbjct 19468 CAAGCCTCCACCAGTGAGCTCTATGGCAAAGTACAAGAGGTTCCACAGTCTGAGACCACC 19527 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || ||||| ||| || || | || || || | || || |||||||| | Sbjct 19528 CCATTCTATCCCCGTTCACCATACGCCGTCGCCAAGCAATTTGCCTACTGGATCTTGGTC 19587 Query 61209 AATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGAGT 61268 || || || || | || |||| | || ||| ||| || ||||||||| | Sbjct 19588 AACTATCGTGAAGCCTACAACATGTACGCCTGCAACGGTATTCTCTTTAATCACGAGTCT 19647 Query 61269 CCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTTTT 61328 || | ||||| | ||||| ||||||||||| || | || ||| |||| | Sbjct 19648 CCAAGAAGAGGCCCCACTTTTGTCACTCGTAAAATCACCAGATTCGTGGCACGTATTGCT 19707 Query 61329 AACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGATAT 61388 || | || || | | ||||| || ||||| | | || | |||||||| || Sbjct 19708 CTTGGCCACAAAGAAGTCCTCTATCTCGGCAACATCAATGCCCAACGTGATTGGGGTCAT 19767 Query 61389 GCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGACTAC 61448 || |||||||| |||||| ||||||| | ||||| |||||||| | ||||| || || Sbjct 19768 GCCAAAGATTATGTCGAGGGTATGTGGCTCATGTTACAACAAGACAAACCAGAAGATTAT 19827 Query 61449 GTTATTGCGACTGG 61462 ||| | || || || Sbjct 19828 GTTTTGGCCACCGG 19841 >seq29 Length=85636 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| |||| |||||||||||||||||||| || ||||||| || ||||||| |||||| Sbjct 84889 GCTAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTC 84948 Query 165766 GAGCCCCACGATGGGC 165781 ||||||| | ||||| Sbjct 84949 GAGCCCCCCTTTGGGC 84964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057807356461640