Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq697 206 3e-48 >seq697 Length=10231 Score = 206 bits (228), Expect = 3e-48 Identities = 440/646 (68%), Gaps = 21/646 (3%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || ||| || || | ||| || | |||||||| | ||||| || |||||||| | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAAC--GACCC 17073 ||||||| ||||||||| || |||||||| | |||||| || | | || | | | Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGAGCAAAAACTGCCGC 5834 Query 17074 AGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TCGCG 17131 ||||| | ||||||||||||| ||||| || | ||| |||||||| | | | || Sbjct 5833 TGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC- 5777 Query 17132 TCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 |||| |||||| || |||| ||||| || | || | || || || Sbjct 5776 ----TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTC 5721 Query 17192 TCTATGGCCTTAAATAATTT-CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAG 17250 || ||||| || |||| ||| ||||||| | | | || || || || ||||| | Sbjct 5720 TCGATGGCGTTGAATAGTTTGCTCTTTTCCACGCTG-TCTTGGATGTAGGTGTCGATCAA 5662 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 || ||||| | || || || ||||| || ||||| || || || || || || |||| Sbjct 5661 GAGACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCT 5602 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTT-CCGCTAGATTTTCGTTCACGATGC 17369 || || | |||||||||| ||| | || | || || |||||||| || || || | Sbjct 5601 AGCCTCTGGAATTTGAACTT-CACTCATAAACTTTGTGGCAAGATTTTCATTGACAATAC 5543 Query 17370 CGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCG-TCCGGTGTA 17428 | || || || |||||||| ||||| | || |||||||| |||| | | || Sbjct 5542 CATCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTA 5483 Query 17429 AGAAC--GCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAAC 17486 | | | ||| || || | |||| | | ||| | |||||||| |||||||||| Sbjct 5482 ATTTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAAC 5423 Query 17487 TAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACAT 17546 | || | || | ||| ||||| ||||| |||||||||| || || ||||||| ||| Sbjct 5422 TGGCTTCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAA 5363 Query 17547 ATCTATCTAAGGATTCCTTTAACACGGGCTCGTCTTCCATTTTTTG 17592 |||||||| |||||||| | ||| ||||||||| |||| Sbjct 5362 ATCTATCTTTATTCTCCTTTAATATTGGC---TCTTCCATTATTTG 5320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537655675040