Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq697 264 1e-65 seq2 190 2e-43 >seq697 Length=10231 Score = 264 bits (292), Expect = 1e-65 Identities = 423/601 (70%), Gaps = 11/601 (2%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| |||||| || || | |||||| ||||||||||| | ||| || | ||||| || | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA---TGATC 24243 | || | |||||||| | ||||| || || |||||||| || || ||||| || Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 24244 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC 24303 | ||||| | || || || || || |||||||||| | | ||| || | || Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 ||| ||||| | ||||| |||||||||||||| ||||| || || ||||| | Sbjct 5776 TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGA 5717 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || || || || | | | ||||| || |||| | || || || ||||| |||| Sbjct 5716 TGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGAC 5657 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 | || | || ||||| |||||||||||||| ||||| || || |||||||||||||||| Sbjct 5656 TGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCT 5597 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCA 24542 | | ||| || ||||| | || || | || | || | ||||||||| || || || ||| Sbjct 5596 CTGGAATTTGAACTTC-ACTCATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT--- 24599 ||||| || ||||| ||||| |||| ||| ||||| ||||| ||| | Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 || |||||||| |||| |||| | | ||| | |||||| |||||||||| || Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 || || | ||| ||||| ||||| || |||| | || ||||| || | ||||||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 24720 T 24720 | Sbjct 5357 T 5357 >seq2 Length=160969 Score = 190 bits (210), Expect = 2e-43 Identities = 573/878 (65%), Gaps = 15/878 (2%) Strand=Plus/Minus Query 53701 CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 53760 ||| |||||||| |||| ||| |||||||| || || | | | ||||| | || Sbjct 39122 CAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGAT 39063 Query 53761 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 53820 || |||||||| || || | ||||| || | ||||||||||| ||| || Sbjct 39062 TTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATT 39003 Query 53821 ACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGC 53880 || ||||| || || || |||||||| ||||||||||| || |||| ||| | ||| || Sbjct 39002 GCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGC 38943 Query 53881 TTTCCAGACGACACGAGCCTTTATTATAGATTTGT----ATCTCTTTTCTCTTTCGTATA 53936 ||||| | | | || || || | | ||| |||| | | ||| ||||| Sbjct 38942 AAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCTT-CGTATT 38884 Query 53937 GTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 53996 | ||| | | | |||||| || | | | |||| ||||| ||| | | Sbjct 38883 GGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGCTTCGTTGG 38824 Query 53997 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 54056 |||| | | ||||| || ||| | || |||| || ||||||||| ||| | || Sbjct 38823 GACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGACCC 38764 Query 54057 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 54116 | || || ||| || ||||||| ||| |||||| || || |||||||| | || Sbjct 38763 AGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAAT 38704 Query 54117 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCC 54176 ||| ||| | | |||||| | ||||| || |||||||| | || | | || | Sbjct 38703 CGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTC 38644 Query 54177 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 54236 ||| || || || || | |||||| || |||| |||| | || | | ||| || | Sbjct 38643 TCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGA 38584 Query 54237 TAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTAC 54296 |||||| ||||||| || ||||| || |||||| || | ||||| | || || Sbjct 38583 CAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGT 38524 Query 54297 TAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 54356 | | | ||| || || || || |||| ||| | || || |||| | || | Sbjct 38523 GACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGT 38464 Query 54357 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-G 54415 ||||||| || ||||| || ||| |||| | | || ||||| || ||||| || | Sbjct 38463 CATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGAG 38404 Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 | | | || |||| ||||| | ||| || | ||||| ||||| |||| Sbjct 38403 GGTTGGGT-GTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCTTTTGGCTG 38345 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 54531 || |||| ||| ||||||| ||| | ||| | ||| || | |||| || || | Sbjct 38344 AGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGC---CCAAC-GA 38289 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 54569 |||||||||||||||||| || || | |||| ||||| Sbjct 38288 GACACGCATTAACATGTGTTGGGGACGCTCAATGATCT 38251 Score = 93.3 bits (102), Expect = 5e-14 Identities = 317/485 (65%), Gaps = 13/485 (3%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||| |||| | | || ||| | ||||| ||||||||||| || || || ||| Sbjct 40045 GTGAATTGGATGGCGTCTGCAGCTGGTCTGGTACGGAGATAGTACATACCGGTCTTGAGA 39986 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || |||| |||||| ||||| ||| ||||||||| | | || || || ||| Sbjct 39985 CCCTTTTTCCAGGAGTAAAAGTGCATCGATGTGAGTTTGGAAAAGGTGGGCTCAGCAATA 39926 Query 52928 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 52986 || ||| | || | || ||||| || || ||||| || | || || ||||| | || Sbjct 39925 AAGACATTGA-AGCTCTGGCTTTGGTCAATAAAGGCACCACGCTCGGCGGCCATGTCAAT 39867 Query 52987 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 53045 || || |||| |||||||||| | ||||| || | ||| || | ||| || || Sbjct 39866 GAGGGTTCTTTGACGAATTTCCCAGACTGTTTTGTAGAGCTC-TTTGAGATCGTCGGG-- 39810 Query 53046 GGTTT-----GTATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATC 53100 | ||| ||| || ||| || | | | || || ||||||||||| Sbjct 39809 GATTTCCTCAATATCTTGGATACTGCCTCTGTGGAGAATGATTTGGTTCTTGATCTCTGG 39750 Query 53101 ATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTC 53160 ||||| ||| | | | | | ||||| || ||| || | ||||| Sbjct 39749 CGACCATAGACCAAGCTCCATGAGATCGGTGAGGAGTTGTTTATTTACAATGGTGAATTC 39690 Query 53161 TCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATT 53220 || | ||| || | ||| ||||||| || || || || || | ||||||| || Sbjct 39689 ACCGGCCAACACACGACGACTGTAAATGTTGGATGTGTATGGCTCAAAGCACTCATTGTT 39630 Query 53221 TCCCAAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAA 53279 ||| | |||||||| || || | || || ||||| || || | ||| | ||| ||||||| Sbjct 39629 TCCGAGAATTTGAG-AGGTGCTGGCGGTTGGCATTGGGGCAATCAAAAGACTGTTTCTAA 39571 Query 53280 GACCG 53284 ||||| Sbjct 39570 GACCG 39566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712486373440