Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq697 181 1e-40 seq79 98.7 1e-15 seq57 93.3 4e-14 seq1179 89.7 5e-13 seq778 84.2 2e-11 >seq697 Length=10231 Score = 181 bits (200), Expect = 1e-40 Identities = 329/477 (69%), Gaps = 7/477 (1%) Strand=Plus/Plus Query 116723 TTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGAC 116782 || || || ||||| || ||||||| | || ||||||||||||| ||||| || Sbjct 5482 TTAAATGATAACGAACGTTATTTCATATCCAATGTTTTGGCCTTTTTCGCTGCCAGTGAT 5541 Query 116783 GGCATCGTCAACGAGAATCTGGTCG-AGCGTTTCGCTCAG-GAGGTGCAGGTGGCCGAGG 116840 || || ||||| || ||||| | | | |||| | || || || || | | |||| Sbjct 5542 GGTATTGTCAATGAAAATCTTGCCACAAAGTTTA--TGAGTGAAGTTCAAATTCCAGAGG 5599 Query 116841 CGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGA 116900 | | || ||||| ||||| || || ||||| || ||| | || || || | || Sbjct 5600 CTAGATGTTTCTATGGCTTCCAAATTGCCATTGAAAACATCCATTCAGAGACCTACAGTC 5659 Query 116901 CCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCG 116960 | | |||||||| ||| | | | ||| ||| | | || |||||||||| Sbjct 5660 TCTTGATCGACACCTACATCCAAGACAGCGTGGAAAAGAGCAAACTATTCAACGCCATCG 5719 Query 116961 AGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG 117020 |||| || || || || ||| |||||||||| ||||| || | |||||| || ||| Sbjct 5720 AGACCATCCCCTGTGTGAAAAAGAAGGCCGACTGGGCATTGAGATGGATCACCAACAGCA 5779 Query 117021 AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGG 117080 | | || | ||| || | || ||||| || ||||||||||| |||| || | Sbjct 5780 AATCA---TTTGCCGAACGTTTAGTTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCAGCG 5836 Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140 ||||||| | | || ||||||||||||||||| || | |||||||| |||| ||| Sbjct 5837 GCAGTTTTTGCTCTATCTTTTGGCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCT 5896 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 |||||||||||| | ||||||||||| || ||| |||||||||||||| ||| Sbjct 5897 CTAACGAGCTCATCAGTCGTGACGAGGGTCTCCACTGCAACTTTGCCTGTTTGTTGT 5953 >seq79 Length=61457 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || |||||||||||| | || || |||| | | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | ||| ||||||| |||||||| || ||||| | || || Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| ||||||| | ||| || ||||| | || |||| || || | ||||||||| Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || | || || ||| |||| Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGT 10545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| | || ||||||||||||||| | || ||||||| | | Sbjct 11210 AATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTC 11151 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | ||| ||||||| |||||||| || ||||| | || || Sbjct 11150 TGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCA 11091 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || ||||| | || || | | ||| | |||||||| Sbjct 11090 ACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAA 11031 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||| || || |||| || ||| Sbjct 11030 CATCCAAAAAGAATCCACTCTTCAT 11006 >seq57 Length=71319 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| ||||| || |||||||| || | || || |||| | | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | || ||||||| |||||||| || ||||| | || || Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 43523 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || ||||| |||| || | || || | ||||||||| Sbjct 43522 CAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAAC 43463 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| ||||| | || || ||| |||| Sbjct 43462 ATCCAAAAGGAATCTACTCTCCATTTAGT 43434 >seq1179 Length=2421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| | || || |||||||||||| | || || |||| | | Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | |||| ||||| ||||||| || ||||| || ||||| | || | Sbjct 2034 TGATACAATTGATAACG-TCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATC 2092 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | |||| || || ||||| |||| |||| | || | ||||||| Sbjct 2093 AACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACA 2152 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || || || |||| || ||| |||| Sbjct 2153 ACATTCAAAAAGAATCCACTCTTCATTTAGT 2183 >seq778 Length=8042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| | || || || |||||||| |||| ||||||| Sbjct 4921 AACATGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGAAGGT 4862 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | ||||| |||||| || || | |||||||| || ||||| | || Sbjct 4861 TCTGACACCATCGAAAACG-TCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGA 4803 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | |||| || || ||||| | || || | | || | ||||| Sbjct 4802 TCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTA 4743 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || || | || || || |||| Sbjct 4742 CAACATCCAAAAAGAATCAACCCTCCACTTAGT 4710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211291385280