Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1179 183 5e-41 seq79 158 2e-33 seq57 150 3e-31 seq298 113 7e-20 seq778 109 8e-19 >seq1179 Length=2421 Score = 183 bits (202), Expect = 5e-41 Identities = 168/210 (80%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || || |||||||| || | || |||||| Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| ||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 2263 GATACAATTGATAATGTTAAAACT-AAAATTCAAGATAAAGAAGGTATTCCACCCGATCA 2321 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| |||||||||||||| |||||||| || ||| || |||| ||| || ||||| Sbjct 2322 ACAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAA 2381 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||||||||| ||| | || ||||| Sbjct 2382 CATTCAAAAAGAATCCACTCTTCACTTGGT 2411 Score = 152 bits (168), Expect = 8e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || |||| || ||||| || || | || |||||| Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | || ||||||||||||||||||||||| ||||| ||||| Sbjct 2034 TGATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCA 2093 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||| |||||||| || || || |||| || || || || Sbjct 2094 ACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAA 2153 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| ||| | ||||| ||| | | ||| |||||||||| ||| || Sbjct 2154 CATTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTT 2212 >seq79 Length=61457 Score = 158 bits (174), Expect = 2e-33 Identities = 180/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || ||||||||| ||| | || || |||| |||||||| || || | || | |||| Sbjct 11213 TATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGG 11154 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 |||||| ||| ||| |||| ||||||||||| ||||||||||| ||||| || Sbjct 11153 CTCTGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGA 11094 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||||| | | || ||||| || ||||||||||| ||| || |||| ||| || || Sbjct 11093 TCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTA 11034 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || ||||||||||| ||| | |||||||| | | ||| |||||||||| ||| Sbjct 11033 CAACATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGGTATGCAAAT 10974 Query 124775 TT 124776 || Sbjct 10973 TT 10972 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||| || ||||| || || | || |||||| | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || || ||||||||||| || |||| || ||| || || || Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| ||| | ||||| ||| | | | |||||||||| ||| || Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTCAGAGGTGGTATGCAAATTT 10516 Score = 129 bits (142), Expect = 9e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || || ||||| || | || | |||| | Sbjct 10297 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCT 10238 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || |||| ||| || ||||||||||| |||||||| ||||| ||||| Sbjct 10237 GATACCATTGAAAACGTTAAGACA-AAGATTCAAGATAAGGAAGGTATCCCACCCGATCA 10179 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| || ||||| || || ||||||||||| || |||| || ||| || ||||| Sbjct 10178 ACAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAA 10119 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||| | ||||| || Sbjct 10118 CATTCAAAAGGAATCCACTCTCCATTTAGT 10089 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || ||||| || ||| | || | |||| Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| ||||||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 10465 GACACCATTGAAAATGTTAAAACT-AAAATTCAAGACAAAGAAGGTATTCCACCCGATCA 10407 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || || ||||| || ||| |||| || ||| ||||| || Sbjct 10406 ACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAA 10347 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| ||| | ||||| || | | | |||||||||| ||| || Sbjct 10346 CATCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTCAGAGGTGGTATGCAAATTT 10288 Score = 113 bits (124), Expect = 7e-20 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || || ||||| ||| | || | |||| Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || || ||||| ||||||||||| ||||| ||||| Sbjct 10921 GACACCATTGAAAACGTTAAGACC-AAGATCCAAGACAAAGAAGGTATCCCACCCGATCA 10863 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| || ||||||||||| ||| || |||| ||| || || || Sbjct 10862 ACAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAA 10803 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| ||| | ||||| || | | | |||||||||| ||| || Sbjct 10802 CATCCAAAAAGAATCTACTCTTCATTTAGTCCTCAGACTTAGAGGTGGTATGCAAATTT 10744 >seq57 Length=71319 Score = 150 bits (166), Expect = 3e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || || | || | |||| | Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || ||||||||||| |||||||| ||||| |||||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| ||||||||||| || ||||||||||| ||| || |||| ||| || || ||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||||||| ||| | ||||| || | | | |||||||||| ||| || Sbjct 44146 ATTCAAAAAGAATCCACTCTTCATTTAGTCCTCAGACTCAGAGGTGGTATGCAAATTT 44089 Score = 140 bits (154), Expect = 5e-28 Identities = 176/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || || || || ||| | || |||||| | Sbjct 43870 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCT 43811 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || ||||||| || |||||||| ||||||||||| ||||| ||||| Sbjct 43810 GATACCATTGAAAACGTTAAAACC-AAGATTCAAGACAAAGAAGGTATTCCACCCGATCA 43752 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| |||||||| || || ||||||||||| || |||| || ||| || ||||| Sbjct 43751 ACAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAA 43692 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| || | ||||| || | | | |||||||||| ||| || Sbjct 43691 CATCCAAAAAGAATCTACCCTCCATTTAGTCCTCAGACTCAGAGGTGGTATGCAAATTT 43633 Score = 136 bits (150), Expect = 6e-27 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || || || || || ||||| || ||| | || | |||| Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| ||||||| ||||||||||| ||||||||||| ||||| ||||| Sbjct 43582 GACACCATTGAAAATGTTAAAACT-AAAATTCAAGACAAAGAAGGTATCCCACCCGATCA 43524 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || |||||||| |||||| |||| || ||| || || || Sbjct 43523 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAA 43464 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||| | ||||| ||| | | | |||||||||| ||| || Sbjct 43463 CATCCAAAAGGAATCTACTCTCCATTTAGTTCTTAGACTCAGAGGTGGTATGCAAATTT 43405 Score = 127 bits (140), Expect = 3e-24 Identities = 173/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || ||||| || ||| | || | |||| Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || |||||||| ||||||||||| ||||| |||||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||||||||| ||| || |||| ||| ||||| || Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| ||| | ||||| ||| ||| ||| |||||||||| ||| || Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGTTCTTAGACTTA-GAGGTGGTATGCAAATTT 43861 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || || || || || | || | |||| | Sbjct 43414 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCT 43355 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || ||||||||||| |||||||| ||||| |||||| Sbjct 43354 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 43295 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || ||||||||||| ||| | || || || ||||| ||| Sbjct 43294 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTACCTTGTCTGATTACAAT 43235 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTT-TTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||||||||| ||| | ||||| ||| ||| ||| |||||||||| ||| || Sbjct 43234 ATCCAAAAAGAATCTACTCTCCATTTAGTTCTTAGACTTA-GAGGTGGTATGCAAATTT 43177 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| | || || ||||| || || | || | |||| | Sbjct 43186 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCT 43127 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || || |||||||| ||||||||||| ||||| |||||| Sbjct 43126 GATACCATCGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43067 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || ||||||||||| || |||| || ||| || ||||| Sbjct 43066 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43007 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || ||||| ||||| || | ||||| ||| | | | ||||||||| Sbjct 43006 ATCCAAAAGGAATCTACCCTCCATTTAGTTCTCAGACTCAGAGGTGGTA 42958 >seq298 Length=27992 Score = 113 bits (124), Expect = 7e-20 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 124543 AAATATTTATAAAGACACTA---ACAGGCAAAACTATAACTATAGAGATTGAAGCAAATG 124599 ||||||| ||| ||| | | | ||| |||||||| || | || |||||| | Sbjct 13400 AAATATTAATATAGATATAATAAATAGGTAAAACTATTACCCTCGAAGTTGAAGGTTCCG 13341 Query 124600 ATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAAC 124659 |||| || ||| | || ||||| ||||| ||||||||||| || || ||||||| Sbjct 13340 ATACCATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCCGATCAAC 13281 Query 124660 AAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATA 124719 |||| ||||| ||||| || ||||||||||| || |||| || ||| ||||| || | Sbjct 13280 AAAGACTTATCTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCCGATTACAACA 13221 Query 124720 TTCAAAAAGAATCAAC 124735 | ||||||||||| || Sbjct 13220 TCCAAAAAGAATCTAC 13205 >seq778 Length=8042 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||||||||| ||||| ||||||||| | | || ||||| || ||| Sbjct 4834 AAGATCCAAGACAAAGAAGGTATCCCACCCGATCAACAACGTTTAATCTTTGCCGGTAAA 4775 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| || |||| ||| || || || || |||||||||||||| | || Sbjct 4774 CAATTAGAAGATGGTAGAACTTTATCTGACTACAACATCCAAAAAGAATCAACCCTCCAC 4715 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || ||| | | | ||||||||||| || Sbjct 4714 TTAGTTCTCAGACTTAGAGGTGGTATTGAA 4685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755444403750400