Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq79 107 2e-18 seq57 86.0 5e-12 >seq79 Length=61457 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| ||||| |||||||| ||||||||||| | ||| || ||| || Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || || ||||| |||| | ||| || |||||||| || || || || |||||| | Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 10436 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| |||||| | ||| | |||||| | | ||||| || | || | ||||| Sbjct 10437 ATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTTA 10496 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| || ||||| ||||| Sbjct 10497 CCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| || || || ||||||||||| || || | ||| || || || Sbjct 10089 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGATAAAGTACGACCGTCTTCT 10148 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| || ||| | ||||| | || |||||||| || || || ||||| ||| | Sbjct 10149 AATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 10208 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | ||| | ||| || | || ||||| || | ||| | || || Sbjct 10209 ATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCGACTTCAAGGGTAATAGTCTTA 10268 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| || ||||| ||||| Sbjct 10269 CCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 >seq57 Length=71319 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||| || | ||| | ||| || | ||||| ||| Sbjct 44130 GTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCA 44189 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || || | || |||||||| || || || ||||| ||| ||| || || Sbjct 44190 GCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGAATCTTGGTCTTG 44249 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||| || | | ||||| || | ||| | ||||| || || |||||| Sbjct 44250 ACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGTTTTACCAGTGAGAGTT 44309 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||| ||||| Sbjct 44310 TTAACAAAAATTTGCAT 44326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433823907185776