Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq57 125 1e-23 seq778 120 5e-22 seq79 120 5e-22 seq1179 113 7e-20 seq298 95.1 2e-14 >seq57 Length=71319 Score = 125 bits (138), Expect = 1e-23 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || ||||| | ||| |||||||| ||||| || || || Sbjct 44100 CCACCTCTGAGTCTGAGGACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAT 44159 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| ||||||||||| | |||||| ||||| || || Sbjct 44160 AAAGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGG 44219 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||||| |||| ||| ||| Sbjct 44220 ATACCTTCCTTATCTTGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACT 44279 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| || | ||||||| || |||||||| Sbjct 44280 TCAAGGGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| | || ||||| | ||| |||||||| || || ||||| || Sbjct 43872 CCACCTCTAAGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGAT 43931 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| || || ||||| || | ||| ||||| || ||| Sbjct 43932 AAAGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGA 43991 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||| ||||| | ||| ||| Sbjct 43992 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACT 44051 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| || || || || | ||| |||||||| Sbjct 44052 TCAAGAGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| | || ||||| | |||||||||||| ||||| ||||| || Sbjct 43188 CCACCTCTAAGTCTAAGAACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGAC 43247 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| || || ||||| || | ||| ||||| || || Sbjct 43248 AAGGTACGTCCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGG 43307 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| |||||||| ||||| |||| ||| ||| Sbjct 43308 ATACCTTCCTTATCTTGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACT 43367 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || || ||||| || || || |||| ||| |||||||| Sbjct 43368 TCGAGGGTAATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 Score = 107 bits (118), Expect = 3e-18 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || ||||| | ||||||||||| || ||||| || || Sbjct 43644 CCACCTCTGAGTCTGAGGACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGAT 43703 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | || ||||||||||| || || ||||| | |||||| ||||| || ||| Sbjct 43704 AAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGA 43763 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||||| |||| ||| ||| Sbjct 43764 ATACCTTCTTTGTCTTGAATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACT 43823 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || || ||||| || || || |||| ||| |||||||| Sbjct 43824 TCAAGAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || ||||| | |||||||| || || ||||| || || Sbjct 42960 CCACCTCTGAGTCTGAGAACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGAT 43019 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | || ||||||||||| ||||||||||| || | ||| ||||| || ||| Sbjct 43020 AAAGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGA 43079 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| ||||| || | ||| ||| Sbjct 43080 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACT 43139 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| || || || || | ||| |||||||| Sbjct 43140 TCAAGGGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 43186 >seq778 Length=8042 Score = 120 bits (132), Expect = 5e-22 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| | || || || | || |||||||| || || || || || Sbjct 4692 CCACCTCTAAGTCTGAGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAT 4751 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| || ||||| || || | ||| ||||| || || Sbjct 4752 AAAGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 4811 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| || || |||| ||| ||| Sbjct 4812 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACT 4871 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTA 146284 || || ||||| || ||||| ||||| ||||||| ||| |||||||| |||||| Sbjct 4872 TCGAGAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAGATTTGCATGTTATTA 4925 >seq79 Length=61457 Score = 120 bits (132), Expect = 5e-22 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| | || ||||| | |||||||||||| || || || || || Sbjct 10755 CCACCTCTAAGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 10814 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | ||| ||||||||||| || |||||||| || | ||| ||||| || || Sbjct 10815 AAAGTTCTACCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGG 10874 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| || ||||||| ||| ||| Sbjct 10875 ATACCTTCTTTGTCTTGGATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACT 10934 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || || ||||| || || ||||| | ||| |||||||| Sbjct 10935 TCAAGAGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || ||||| | |||||||||||| || || || || || Sbjct 10527 CCACCTCTGAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAT 10586 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | || ||||||||||| || || ||||| | |||||| ||||| || || Sbjct 10587 AAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGG 10646 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| |||||| || | ||| ||| Sbjct 10647 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACT 10706 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || ||||| |||||||| ||||| ||||| | ||| |||||||| Sbjct 10707 TCAAGGGTGATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 Score = 114 bits (126), Expect = 2e-20 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | |||||||| | ||| |||||||| || || || || || Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||| | ||| ||||||||||| || ||||| || || | ||| ||||| || || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| |||||| || | ||| ||| Sbjct 11103 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACT 11162 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTA 146281 || || ||||| ||||| || ||||| ||||||| || ||||||||| || Sbjct 11163 TCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCATTATA 11213 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || ||||| | |||||||||||| || || ||||| || Sbjct 10299 CCACCTCTGAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGAT 10358 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || ||||| || |||||||| || || | ||| ||||| || ||| Sbjct 10359 AAAGTACGACCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGA 10418 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| || ||||||| ||| ||| Sbjct 10419 ATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACT 10478 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || || |||||||| || || ||||| | ||| |||||||| Sbjct 10479 TCAAGAGTAATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 105 bits (116), Expect = 1e-17 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCT 146107 |||||||||||||||| | || ||||| | ||| |||| |||| || || ||||| || Sbjct 10069 TTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTGGATTCCTTTTGA-ATGTTATAGTCA 10127 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | ||| | | || ||||||||||| || || ||||| | |||||| ||||| || Sbjct 10128 GATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGT 10187 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 || || ||||| |||||||| ||||| || | ||| Sbjct 10188 GGGATACCTTCCTTATCTTGAATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCG 10247 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || || ||||| || || ||||| | ||| |||||||| Sbjct 10248 ACTTCAAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 >seq1179 Length=2421 Score = 113 bits (124), Expect = 7e-20 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| | || ||||| | ||| |||||||| || || || || || Sbjct 2201 CCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2142 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | |||||| | || || |||||||| || ||||| || || | ||| ||||| || || Sbjct 2141 AAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGG 2082 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| || | ||| ||| Sbjct 2081 ATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACT 2022 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || ||||| |||||||| ||||| ||||||| ||| ||||||||| Sbjct 2021 TCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCATT 1974 Score = 113 bits (124), Expect = 7e-20 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 146060 AGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTG 146119 ||||| | |||||| || | ||| |||||||| || ||||| || || | ||||| Sbjct 2420 AGTCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTA 2361 Query 146120 CTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCT 146179 | ||| || |||||||| || |||||||| | |||||| ||||| || ||||| |||||| Sbjct 2360 CCATCTTCCAATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCT 2301 Query 146180 TTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTG 146239 |||||||| ||||| |||| ||| ||||| || ||| Sbjct 2300 TTATCTTGAATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTG 2241 Query 146240 ATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || |||||||| || || || || | || |||||||| Sbjct 2240 ATAGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 >seq298 Length=27992 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| ||||| | || || || | ||||||||||| || || ||||| || Sbjct 13175 CCACCTCTGAGTCTGAGGACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGAT 13234 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | || ||||||||||| |||||||| || | |||||| ||||| || || Sbjct 13235 AAAGTACGACCGTCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGG 13294 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 13295 ATACCTTCTTTGTCTTG 13311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743514986869760