Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 145 2e-29 >seq2 Length=160969 Score = 145 bits (160), Expect = 2e-29 Identities = 440/671 (66%), Gaps = 9/671 (1%) Strand=Plus/Plus Query 248794 ATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCG 248853 ||||||||| | |||||| || || |||||||||| ||||| || || |||| | Sbjct 38169 ATTGACTACAAGAGAGATTTTGACTATGATTTCTTTGGCTTCAAGACACTCGAGAGAAGT 38228 Query 248854 TATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTG 248913 || | | | | | ||||| ||||| | || || || |||||||| ||||| || Sbjct 38229 TACTTGCAAAGAGTCAATGGCCAGATCATTGAGCGTCCCCAACACATGTTAATGCGTGTC 38288 Query 248914 GCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGT 248973 | | || || ||| || || | || || |||||||| ||| | || Sbjct 38289 TCGTTGGGCATCCACGGCGACGATTTGGACGCCGCTCTCGAGACCTACGATCTCCTCAGC 38348 Query 248974 GAAC-GCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCA 249032 || ||| | || || ||||| || || ||||| ||| | ||||| |||| ||| Sbjct 38349 CAAAAGCTCTTT-ACCCACGCCACCCCCACCCTCTTTAACTCGGGTACACCCAACCCTCA 38407 Query 249033 GCTGAGCTCGTGCTTTCTTCTTGCCA-TGCAAGACGACTCTGTCGACGGCATTTATGACA 249091 | || | || |||| || ||| | || | || ||||| | ||||| || ||||||| Sbjct 38408 GATGT-CAAGTTGTTTCCTCGTGCAAATGAAGGAAGACTCGATAGACGGTATCTATGACA 38466 Query 249092 CGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTC-C 249150 | || |||||| || || ||||| || || || || ||| || || | || | Sbjct 38467 CTCTCAAACAGTGTGCCCTCATCAGTAAATCTGCCGGTGGCATTGGTATCGCC-TGTCAC 38525 Query 249151 AACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTA 249210 || ||| |||| | | || ||| || || || || | ||||| || Sbjct 38526 AAGATCAGAGCCAGCAGCAGTTATATCCGTGGCACCAACGGCACATCCAACGGTATTGTC 38585 Query 249211 CCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGCC---GA 249267 ||| | ||||| |||| | ||| ||||| | | || |||| | ||| || || Sbjct 38586 CCCATGCTTCGTGTCTTTAATGACACTGCCAGATACGTCGACCAAGGCGGTGGCAAGAGA 38645 Query 249268 AAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGAC 249327 ||||| | || ||| | || ||||| |||||||||||||| || ||||| | || Sbjct 38646 AAGGGTGCCTTTGCCGTCTACTTGGAGCCATGGCACGCCGATATTTTTGAGTTTATCGAT 38705 Query 249328 TTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGG 249387 |||||||||||| ||||||| ||| |||||||| | |||||||| |||| ||| ||| Sbjct 38706 TTGAAAAAGAACCACGGCAAAGAGGAAATGAGAGCCAGAGACCTCTTTTACGCCCTCTGG 38765 Query 249388 GTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCG 249447 ||| ||| | || ||| | ||| || ||| ||||||| | || ||| ||| Sbjct 38766 GTCAGTGACCTCTTTATGGAAAGAGTCGAGCAAAACGCCGATTGGTCCCTCTTTTGTCCC 38825 Query 249448 TCCGACGCCCC 249458 ||| ||||| Sbjct 38826 AACGAAGCCCC 38836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073749505627904