Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq697 161 1e-34 >seq697 Length=10231 Score = 161 bits (178), Expect = 1e-34 Identities = 403/602 (67%), Gaps = 24/602 (4%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| ||||| | || || || ||||| || | ||| || || ||||| || ||||| Sbjct 5948 AAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 5889 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 14319 || || |||||||| || ||||| || | |||||| || | ||| || | ||| || Sbjct 5888 AAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAAAACTGCCGCTGAA 5830 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 || || ||||| || || ||||| || | ||| ||||| |||| ||| || |||| Sbjct 5829 AAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGAT---TTGCTGTT 5773 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 | |||||| | ||||| || | || ||||| | | | || || || || || Sbjct 5772 GGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGC 5713 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTAC------TTGAAATGTATGTATCAATAAGTAA 14493 || |||| ||| | |||||| || ||| | |||| || || || | | Sbjct 5712 GTTGAATA---GTT--TGCTCTTTTCCACGCTGTCTTGGA-TGTAGGTGTCGATCAAGAG 5659 Query 14494 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGC 14553 || || | || || || |||||||| || || || || || ||||| ||||||||||| Sbjct 5658 ACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGC 5599 Query 14554 TTCTGACCATTGTACCTCTGAGTAA-AATCTTTCGGCCAA-ATTTTCATTAACTATACCA 14611 |||| ||| || || | | | || |||| | ||| ||||||||| || |||||| Sbjct 5598 CTCTGGAATTTGAACTTC--ACTCATAAACTTTGTGGCAAGATTTTCATTGACAATACCA 5541 Query 14612 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGT 14671 ||||| || || ||||| ||||| | || || || || | || | || | | | Sbjct 5540 TCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAAT 5481 Query 14672 ---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 || ||||||||| | ||| | | ||| | ||| || ||||||||||||| Sbjct 5480 TTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTG 5421 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14788 || |||||| ||| ||||| |||||| || || | | || || || | |||||| Sbjct 5420 GCTTCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAAT 5361 Query 14789 CT 14790 || Sbjct 5360 CT 5359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482338195995040