Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1179 141 7e-29 seq79 141 7e-29 seq57 131 1e-25 seq778 96.9 3e-15 seq298 95.1 9e-15 >seq1179 Length=2421 Score = 141 bits (156), Expect = 7e-29 Identities = 167/223 (75%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||||||||||| |||||| || ||||||||||||||||| ||||| | | ||| || Sbjct 2420 AGTCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTA 2361 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||||||||||||| || ||| | ||||||||||||||||| || | ||||| Sbjct 2360 CCATCTTCCAATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCT 2301 Query 18228 TTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTC---ACCGGGCTCGGTTTCAA 18282 ||||| ||||| ||| || || | ||| || || ||| || ||||| Sbjct 2300 TTATCTTGAATTTTAGTT--TTAACATTATCAATTGTATCGGAACC---TTCAACTTCAA 2246 Query 18283 TGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| |||| || ||||| || || |||||||||||||| Sbjct 2245 GGGTGATAGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || ||| || || | ||||| || ||||||||||||||||||||||| | | Sbjct 2201 CCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2142 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| |||||||||||||| || ||| |||| | | ||||||||| || Sbjct 2141 AAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGG 2082 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||||| |||||| | ||| || ||| | || | Sbjct 2081 ATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACT 2022 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| |||| || || || ||||| || |||||||||||| Sbjct 2021 TCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCATT 1974 >seq79 Length=61457 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | || |||||| |||| ||||| || ||||||||||| ||||||||||| | Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| |||||| |||||||| || ||| |||| | | ||||||||| || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| || || ||||| ||| || | | ||| ||| ||| | ||| | Sbjct 11103 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACT 11162 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| ||||||| || || ||||| ||||||||||||||| Sbjct 11163 TCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCATT 11210 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | || || || ||||||||||| ||||||||||| | | || | Sbjct 10536 AGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGA 10595 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| |||||||| || || | || |||||||||||||| || | ||||| Sbjct 10596 CCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 10655 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||||| ||| || | | ||| ||| ||| | || ||||| |||| Sbjct 10656 TTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTG 10715 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| || || || ||||| || ||||||||||| Sbjct 10716 ATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 18089 TTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTT 18148 |||| ||| ||| || | ||||| || || | || || || ||||| ||||||||||| Sbjct 10062 TTTTAGTT-TCCACCTCTAAGTCTGAGGACTAAATGGAGAGTGGATTCCTTTTGAATGTT 10120 Query 18149 GTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTG 18208 ||||| | | || || ||||| |||||||| || || | || ||||||||||| Sbjct 10121 ATAGTCAGATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTG 10180 Query 18209 ATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACC 18268 ||| || | ||||||||||| ||| | | ||| || | | ||| || ||| Sbjct 10181 ATCGGGTGGGATACCTTCCTTATCTTGAATCTTTGTCTTAACGTTTTCAATGGTATCAGA 10240 Query 18269 GGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| ||||| ||| || | || || ||||| ||||| || ||||||||||| Sbjct 10241 GCCTTCGACTTCAAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | ||||| || ||||||||||| ||||||||||| | | ||| || Sbjct 10764 AGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTA 10823 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || ||| | || | | ||||||||| || | ||||| Sbjct 10824 CCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCT 10883 Query 18228 TTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTC---ACCGGGCTCGGTTTCAAT 18283 || || | | ||| | ||| || | | ||| ||||| ||| ||| ||||| Sbjct 10884 TTGTCTTGGATCTTGGT-CTTAACGTTTTCAATGGTGTCTGAACC---TTCGACTTCAAG 10939 Query 18284 GGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | || || ||||| ||||| || ||||||||||| Sbjct 10940 AGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | || || || ||||||||||| |||||||| || | | || | Sbjct 10308 AGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGA 10367 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || ||| |||| | | ||||||||| || | ||||| Sbjct 10368 CCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCT 10427 Query 18228 TTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTC---ACCGGGCTCGGTTTCAA 18282 || || ||||| ||| || || | | ||| ||||| ||| ||| ||||| Sbjct 10428 TTGTCTTGAATTTTAGTT--TTAACATTTTCAATGGTGTCTGAACC---TTCGACTTCAA 10482 Query 18283 TGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||| |||| || ||||| ||||| || ||||||||||| Sbjct 10483 GAGTAATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 >seq57 Length=71319 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | ||||| || |||||||||||||| |||||||| | | ||| || Sbjct 44109 AGTCTGAGGACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTA 44168 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || ||| | ||||||||||||||||| || | |||||| Sbjct 44169 CCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCC 44228 Query 18228 TTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||| ||| | |||||| | | | | || ||| ||| ||||| ||| Sbjct 44229 TTATCTTGAATCTTGGT-CTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGT 44287 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| || || | ||||| |||||||||||||| Sbjct 44288 AATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||||||| || | ||||| || ||||||||||| |||||||| || | | ||| || Sbjct 43881 AGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTA 43940 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || || | || | | ||||||||| || | ||||| Sbjct 43941 CCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCT 44000 Query 18228 TTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || ||| ||| | |||||| | | ||| |||||| | ||| ||||| || Sbjct 44001 TTGTCTTGAATCTTGGT-CTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGT 44059 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| |||| || ||||| || || || ||||||||||| Sbjct 44060 AATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||||||| || | || || || ||||| ||||| ||||||||||| | | || | Sbjct 43425 AGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGA 43484 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| ||||||||||| || ||| |||| | | ||||||||| || | ||||| Sbjct 43485 CCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCT 43544 Query 18228 TTATCGGCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGG 18285 || || ||||| ||| || || | | ||| ||||| | || ||||| | Sbjct 43545 TTGTCTTGAATTTTAGTT--TTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAG 43602 Query 18286 TGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| |||| || || | ||||| |||||||||||||| Sbjct 43603 TAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 18089 TTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTT 18148 |||| |||| || || | ||||| || || | || || || ||||| ||||| ||||| Sbjct 42951 TTTTAGTTA-CCACCTCTGAGTCTGAGAACTAAATGGAGGGTAGATTCCTTTTGGATGTT 43009 Query 18149 GTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTG 18208 ||||| | | || || ||||| |||||||| || ||| | || | | |||||| Sbjct 43010 ATAGTCAGATAAAGTACGACCGTCTTCTAATTGTTTACCAGCAAAAATTAAACGTTGTTG 43069 Query 18209 ATCCACGGGCACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCAC 18267 ||| || | ||||| || || ||| ||| | |||||| | | | | || ||| Sbjct 43070 ATCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGT-CTTGACGTTTTCGATGGTATCAG 43128 Query 18268 CGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||| ||||| ||| ||| |||| || ||||| || || || ||||||||||| Sbjct 43129 AGCCTTCGACTTCAAGGGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 43186 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||||||| || | || || || ||||||||||| || ||||| || | || || Sbjct 43197 AGTCTAAGAACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGT 43256 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || || | || | | ||||||||| || | |||||| Sbjct 43257 CCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCC 43316 Query 18228 TTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 ||||| ||| ||| | |||||| | | | | || ||| ||| ||| | ||| Sbjct 43317 TTATCTTGAATCTTGGT-CTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGT 43375 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||| || || || ||||||||||| Sbjct 43376 AATGGTCTTACCAGTCAAGGTCTTAACGAAAATTTGCAT 43414 >seq778 Length=8042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | ||| || |||||||||||||| ||||||||||| | | ||| || Sbjct 4701 AGTCTGAGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTA 4760 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| |||||||| || ||| |||| | | ||||||||| || | ||||| Sbjct 4761 CCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCT 4820 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || || | |||||| | | | | |||||| ||| ||| | ||| Sbjct 4821 TTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTG 4880 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | || || || || ||||| || || |||||||| || Sbjct 4881 ATGGTCTTACCAGTTAAGGTTTTAACGAAGATTTGCATGTT 4921 >seq298 Length=27992 Score = 95.1 bits (104), Expect = 9e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 ||||| || || | |||||| || ||||||||||| |||||||| |||| | || | Sbjct 13184 AGTCTGAGGACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGA 13243 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||||| |||||||| || ||| ||||||||||||||||||| ||| | ||||| Sbjct 13244 CCGTCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCT 13303 Query 18228 TTATC 18232 || || Sbjct 13304 TTGTC 13308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379338322642860