Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq79 95.1 1e-14 seq1179 87.8 2e-12 >seq79 Length=61457 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 || ||||| || ||||||||||| ||||| |||||||| || ||| | || |||||| Sbjct 11212 ATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGC 11153 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | | | |||| ||| ||| |||||| | |||||||| | || || Sbjct 11152 TCTGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGAT 11093 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || ||||||||||| | ||| || |||||| | |||||| | || | || ||| Sbjct 11092 CAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTAC 11033 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGT 25040 | ||| || ||||| |||| |||||||| || Sbjct 11032 AACATCCAAAAAGAATCCACTCTTCATTTGGT 11001 >seq1179 Length=2421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24828 CATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATC 24887 ||| ||||| || || |||||||||||||| || ||||| || ||| | || || ||| Sbjct 1971 CATAATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGG 2030 Query 24888 GAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGA 24947 || | | || | || ||| |||||| | |||||||| | || || Sbjct 2031 CTCTGATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGA 2090 Query 24948 CCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTA 25007 || ||||||||||| | ||| || |||||| ||||||| | ||| || || || Sbjct 2091 TCAACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTA 2150 Query 25008 CAGCATACAGAAAGAGGCCACGCTTCATTTAGT 25040 || ||| || ||||| |||| ||||||||||| Sbjct 2151 CAACATTCAAAAAGAATCCACTCTTCATTTAGT 2183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418297739557760