Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq697 280 2e-70 seq2 158 2e-33 >seq697 Length=10231 Score = 280 bits (310), Expect = 2e-70 Identities = 425/599 (71%), Gaps = 7/599 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| |||||| || || | |||||| ||||||||||| | ||| || | |||||||| | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || | |||||||| | ||||| || || |||||||| || || || || | ||| Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || ||||| || || || || |||||||||| | | || || | |||| Sbjct 5834 CTGAAAAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGCTG 5775 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 | ||||| | ||||| |||||||||||||| ||||| || || || || ||| Sbjct 5774 TTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATG 5715 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || || || || | | | ||||| || |||| | || || |||||||| ||||| Sbjct 5714 GCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTG 5655 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || | || ||||| |||||||||||||| || || || || ||||||||||||||||| Sbjct 5654 TAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCTCT 5595 Query 33933 GTAATCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACT 33991 | ||| || ||||| | || || | || | || | ||||||||| || || |||||||| Sbjct 5594 GGAATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCACT 5536 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TT 34048 ||| || ||||| ||||| |||| ||| ||||| ||||| ||| | || Sbjct 5535 GGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTCTT 5476 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 |||||||| |||| |||| | | ||| | |||||| |||||||||| || || Sbjct 5475 GTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCTTC 5416 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 || | ||| ||||| ||||| || |||| | || ||||||||| | |||||||||| Sbjct 5415 AGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTAT 5357 >seq2 Length=160969 Score = 158 bits (174), Expect = 2e-33 Identities = 561/872 (64%), Gaps = 15/872 (2%) Strand=Plus/Minus Query 62939 CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62998 ||| |||| ||| |||| ||| || ||||| || || | | | ||||| | || Sbjct 39122 CAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGAT 39063 Query 62999 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63058 || |||||||| || || | || || || | ||||||||||| ||| || Sbjct 39062 TTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATT 39003 Query 63059 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63118 || ||||| || || || |||||||| ||||||||||| || || | ||| | ||| || Sbjct 39002 GCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGC 38943 Query 63119 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGT----ATCTCCTTTCTCTTTCGTATA 63174 ||||| | || | || || || | | ||| |||| | | ||| ||||| Sbjct 38942 AAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCTT-CGTATT 38884 Query 63175 GAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCG 63234 | ||| | | | ||||| || | | | |||| | ||| ||| | | Sbjct 38883 GGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGCTTCGTTGG 38824 Query 63235 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63294 |||| | | ||||| || ||| | || |||| || ||||||||| ||| | || Sbjct 38823 GACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGACCC 38764 Query 63295 AAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 | || || ||| || ||||| | ||| |||||| || || |||||||| | || Sbjct 38763 AGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAAT 38704 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 ||| ||| | | |||||| | ||||| || |||||||| | ||| | | || | Sbjct 38703 CGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTC 38644 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63474 ||| || || || || | |||||| || |||| |||| | || | | ||| || | Sbjct 38643 TCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGA 38584 Query 63475 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC 63534 ||||||||| ||| | || ||||| || |||||| | | ||||| | || || Sbjct 38583 CAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGT 38524 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 | | | ||| || || || || |||| ||| | || || |||| | |||| Sbjct 38523 GACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGT 38464 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG-G 63653 ||||||| || ||||| || || |||| | | || ||||| || ||||| || | Sbjct 38463 CATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGAG 38404 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713 | | || || |||| ||||| | ||| || | ||||| ||||| |||| Sbjct 38403 GGTTGGGT-GTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCTTTTGGCTG 38345 Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 63769 || |||| ||| ||||| | ||| | ||| | ||| || | |||| || | | Sbjct 38344 AGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATG----CCCAACGA 38289 Query 63770 GACACGCATTAACATGTGCTGAGGTCTTTCAA 63801 |||||||||||||||||| || || | |||| Sbjct 38288 GACACGCATTAACATGTGTTGGGGACGCTCAA 38257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807932299840