Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq697 226 3e-54 >seq697 Length=10231 Score = 226 bits (250), Expect = 3e-54 Identities = 411/595 (69%), Gaps = 11/595 (2%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||| | || || | ||| ||||| | ||| || || || ||||| ||||| Sbjct 5948 AAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 5889 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAA---TGAACCAGAA 11743 || ||||||||||| || ||||| || | |||||| |||| |||||| || | ||| Sbjct 5888 AAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAAAACTGCCGCTGAA 5830 Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTA 11803 || ||| ||||| || || ||||| || |||| | ||| || || ||| || | Sbjct 5829 AAAGATA--CCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGCTGTTG 5772 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 | |||||| | ||||| || || |||||||| || || || || || || ||| Sbjct 5771 GTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGCG 5712 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 || |||| | | ||||| | | ||| | || || || || || | ||| || Sbjct 5711 TTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGACTGTAG 5652 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 | |||||||| || ||||| || || ||||| || ||||||||||||| ||||||| | Sbjct 5651 GTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCTCTGGA 5592 Query 11984 CACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 || || || | |||||| | || || | ||| ||||| |||||||||||||| | Sbjct 5591 ATTTGAACTTCACTCATAAACT-TTGTGGCAAGATTTTCATTGACAATACCATCACTGGC 5533 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT---TTATC 12099 || ||||| || | | || ||| || || ||||| | | ||||| || | Sbjct 5532 AGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTCTTGTT 5473 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 |||||| | | |||| || ||||| | |||||| | ||||||||||| || | | Sbjct 5472 CCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCTTCAGC 5413 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 |||||| ||||| ||||| ||||||| | || || ||||| | || || ||| Sbjct 5412 TTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468517608144320