Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq697 264 1e-65 seq2 172 7e-38 >seq697 Length=10231 Score = 264 bits (292), Expect = 1e-65 Identities = 427/608 (70%), Gaps = 11/608 (2%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| |||||| || || | |||||| ||||||||||| | ||| || | ||||| || | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA---TGATC 36266 | || | |||||||| | ||||| || || |||||||| || || ||||| || Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 | ||||| | || || || || || |||||||||| | | || || | | Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 ||| ||||| | ||||| |||||||||||||| ||||| || || ||||| | Sbjct 5776 TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGA 5717 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 | || || || || | | | ||||| || |||| | || || || ||||| |||| Sbjct 5716 TGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGAC 5657 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 | || | || ||||| |||||||||||||| ||||| || || |||||||||||||||| Sbjct 5656 TGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCT 5597 Query 36507 CGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCA 36565 | | ||| || ||||| | || || | || | || | ||||||||| || || || ||| Sbjct 5596 CTGGAATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGT--- 36622 ||||| || ||||| ||||| |||| ||| ||||| |||||| ||| | Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 36623 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 36682 || |||||||| |||| |||| | | ||| | |||||| |||||||||| || Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 36683 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 36742 || || | ||| ||||| ||||| || |||| | || ||||| || | ||||||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 36743 TTTTGATT 36750 | || ||| Sbjct 5357 TCTTTATT 5350 >seq2 Length=160969 Score = 172 bits (190), Expect = 7e-38 Identities = 569/878 (65%), Gaps = 15/878 (2%) Strand=Plus/Minus Query 65732 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 65791 ||| |||| ||| |||| ||| |||||||| || || | | | ||||| | || Sbjct 39122 CAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGAT 39063 Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 || |||||||| || || | ||||| || | ||||||||||| ||| || Sbjct 39062 TTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATT 39003 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 || ||||| || || || |||||||| ||||||||||| || || | ||| | ||| || Sbjct 39002 GCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGC 38943 Query 65912 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGT----ATCTCTTTTCTCTTTCGTATA 65967 ||||| | || | || || || | | ||| |||| | | ||| ||||| Sbjct 38942 AAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCTT-CGTATT 38884 Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 | ||| | | | ||||| || | | | |||| ||||| ||| | | Sbjct 38883 GGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGCTTCGTTGG 38824 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 |||| | | ||||| || ||| | || |||| || ||||||||| ||| | || Sbjct 38823 GACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGACCC 38764 Query 66088 AAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 66147 | || || ||| | ||||||| ||| |||||| || || |||||||| | || Sbjct 38763 AGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAAT 38704 Query 66148 CGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 66207 ||| ||| | | |||||| ||||| || |||||||| | ||| | | || | Sbjct 38703 CGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTC 38644 Query 66208 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 66267 ||| || || || || | |||||| || |||| |||| | || | | ||| || | Sbjct 38643 TCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGA 38584 Query 66268 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTAC 66327 |||||| |||||||| || ||||| || |||||| || | || || | || || Sbjct 38583 CAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGT 38524 Query 66328 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 66387 | | | ||| || || || || |||| ||| | || || |||| | || | Sbjct 38523 GACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGT 38464 Query 66388 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-G 66446 ||||||| || ||||| || ||| |||| | | || ||||| || ||||| || | Sbjct 38463 CATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGAG 38404 Query 66447 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 66506 | | | || |||| ||||| | ||| || | ||||| ||||| |||| Sbjct 38403 GGTTGGGT-GTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCTTTTGGCTG 38345 Query 66507 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 66562 || |||| ||| ||||| | ||| | ||| | ||| || | |||| || || | Sbjct 38344 AGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGC---CCAAC-GA 38289 Query 66563 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 66600 |||||||||||||||||| || || | |||| ||||| Sbjct 38288 GACACGCATTAACATGTGTTGGGGACGCTCAATGATCT 38251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 318/486 (65%), Gaps = 15/486 (3%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| |||| | | || ||| | ||||| ||||||||||| || || || ||| Sbjct 40045 GTGAATTGGATGGCGTCTGCAGCTGGTCTGGTACGGAGATAGTACATACCGGTCTTGAGA 39986 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| |||||| ||||| || ||||||||| | | || || || ||| Sbjct 39985 CCCTTTTTCCAGGAGTAAAAGTGCATCGATGTGAGTTTGGAAAAGGTGGGCTCAGCAATA 39926 Query 64959 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 65017 || ||| | || | || ||||| || || ||||| || | || || ||||| | || Sbjct 39925 AAGACATTGA-AGCTCTGGCTTTGGTCAATAAAGGCACCACGCTCGGCGGCCATGTCAAT 39867 Query 65018 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 65076 || || |||| |||||||||| | ||||| || | ||| || | ||| || || | Sbjct 39866 GAGGGTTCTTTGACGAATTTCCCAGACTGTTTTGTAGAGCTC-TTTGAGATCGTCGGGGA 39808 Query 65077 GGT-TTGTAT-TCTGAATGGATCCACCATCTG----CCATAATCCTATTCTTGATCTCAT 65130 | | || ||| ||||| | | |||| || || ||||||||||| Sbjct 39807 TTTCCTCAATATCT---TGGATACTGCCTCTGTGGAGAATGATTTGGTTCTTGATCTCTG 39751 Query 65131 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 65190 ||||| ||| | | | | | ||||| || ||| || | |||| Sbjct 39750 GCGACCATAGACCAAGCTCCATGAGATCGGTGAGGAGTTGTTTATTTACAATGGTGAATT 39691 Query 65191 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTAT 65250 | || | ||| || | ||| ||||||| || || || || || | ||||||| | Sbjct 39690 CACCGGCCAACACACGACGACTGTAAATGTTGGATGTGTATGGCTCAAAGCACTCATTGT 39631 Query 65251 TTCCCAAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 65309 |||| | |||||||| || || | || || ||||| || || | ||| | ||| |||||| Sbjct 39630 TTCCGAGAATTTGAG-AGGTGCTGGCGGTTGGCATTGGGGCAATCAAAAGACTGTTTCTA 39572 Query 65310 AGACCG 65315 |||||| Sbjct 39571 AGACCG 39566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162697047520