Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1179 111 2e-19 seq79 107 2e-18 seq57 96.9 3e-15 seq298 95.1 1e-14 seq778 86.0 6e-12 >seq1179 Length=2421 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | |||||| |||| || || |||||||||||||| || || | Sbjct 2201 CCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2142 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | |||||||| ||| |||| | |||||| |||||||| || Sbjct 2141 AAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGG 2082 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || |||||||| || ||| |||| || || | | || | ||| || | | || || Sbjct 2081 ATACCTTCTTTATC-TTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAAC 2023 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || || ||||| ||||| |||||||| Sbjct 2022 TTCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || || ||||||||||||||||| || | || || ||||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| ||| | || || | ||| |||||||| || || |||||||| || || Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATC-TTG 2293 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| |||||| | | || | ||| |||| || || |||| ||| | || || Sbjct 2292 AATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTT 2233 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || || || || ||||||||| Sbjct 2232 ACCAGTCAAAGTCTTGACAAAAATTTGCATA 2202 >seq79 Length=61457 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | ||||| |||||||| ||||| ||||| | || | ||||| Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || ||||||||| |||| | |||||| |||||||| || || ||||||||||| || Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 10435 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| |||||| | | ||| | ||||| | || || |||| || | || || Sbjct 10436 AATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTT 10495 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 10496 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10526 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| |||| ||||| |||||||| ||||| || || | || || ||||| Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 10832 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| ||| | || | |||||| |||||||| || || ||||||||||| || Sbjct 10833 AATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TTG 10891 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | || || ||| | | ||| | ||||| | || || |||| || | ||||| Sbjct 10892 GATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTT 10951 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 10952 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10982 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | | || || |||| || || |||||||| ||||| || || Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| | |||||||| ||| |||| | |||||| |||||||| || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| || |||| | ||| | || || | | || || Sbjct 11103 ATACCTTCTTTGTC-TTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGAC 11161 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || ||||| || || ||||| || || |||||||| Sbjct 11162 TTCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| || | ||||| |||||||| ||||| || || | || | |||||| Sbjct 10544 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTC 10603 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||| || | || || | ||| |||||||| || || ||||||||||| | Sbjct 10604 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTC-TT 10662 Query 139675 GATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| || |||| | ||| | || || | | || || |||| ||| | || | Sbjct 10663 GAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTT 10722 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || || ||||| ||||| ||||||||| Sbjct 10723 TACCAGTTAAAGTTTTGACGAAAATTTGCATA 10754 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | || || || |||||||||||||| || | || | |||||| Sbjct 10089 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGATAAAGTACGACCGTCTTCT 10148 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| || | || || | ||| |||||||| || || ||||| || || || Sbjct 10149 AATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATC-TTG 10207 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | ||||| ||| | | ||| | || || | | || || |||| ||| | ||||| Sbjct 10208 AATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCGACTTCAAGGGTAATAGTCTT 10267 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| ||||| ||||||||| Sbjct 10268 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10298 >seq57 Length=71319 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| || | ||||| || ||||| |||||||| || | || | |||||| Sbjct 42977 AACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTC 43036 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||||||| | || | |||||| |||||||| || || ||||||||||| | Sbjct 43037 TAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTC-TT 43095 Query 139675 GATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || || || | | ||| | || || | | || || |||| ||| | || | Sbjct 43096 GAATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGTTT 43155 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || ||||| || || ||||| ||||||||| Sbjct 43156 TACCAGTCAAGGTCTTGACGAAAATTTGCATA 43187 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| || | ||||| || ||||| ||||| || || | || | || || Sbjct 43433 AACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTC 43492 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||||||| |||| | |||||| |||||||| || || ||||||||||| | Sbjct 43493 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TT 43551 Query 139675 GATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| |||||| | | ||| | ||||| | | || || |||| || | || | Sbjct 43552 GAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGTTT 43611 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || || | ||||| || || ||||||||| Sbjct 43612 TACCAGTGAGAGTTTTAACAAAAATTTGCATA 43643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 |||||| |||| || || |||||||| ||||| ||||| | || || ||||| Sbjct 43889 AACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCTTC 43948 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||| || | || | |||||| |||||||| || || ||||||||||| | Sbjct 43949 TAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTC-TT 44007 Query 139675 GATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | || || || | | ||| | ||||| | | || || |||| || | || | Sbjct 44008 GAATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTTT 44067 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || ||||| || || ||||| ||||||||| Sbjct 44068 TACCAGTCAAGGTCTTGACGAAAATTTGCATA 44099 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 ||||| || | ||||| |||||||| |||||||| || | || | |||||| Sbjct 43662 ACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTCT 43721 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||| || | || || | ||| |||||||| || || ||||||||||| || Sbjct 43722 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 43780 Query 139676 ATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || |||||| | | ||| | || || | || || |||| || | ||||| Sbjct 43781 AATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGTCTT 43840 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || ||||| || || ||||| ||||||||| Sbjct 43841 ACCAGTCAAGGTCTTAACGAAAATTTGCATA 43871 >seq298 Length=27992 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 |||||||||| ||||| |||||||| ||||| |||||| | || | |||||| Sbjct 13193 ACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGACCGTCTTCT 13252 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | |||||||||||| |||| || | ||| |||||||| || || ||||||||||| | Sbjct 13253 AATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTCTTGG 13312 Query 139676 ATTTT 139680 ||||| Sbjct 13313 ATTTT 13317 >seq778 Length=8042 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||||||||| | || || |||||||| ||||| || || | || || ||||| Sbjct 4709 AACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTC 4768 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | |||||||| ||| |||| | |||||| |||||||| || || ||||||||||| Sbjct 4769 TAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 4828 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | ||| | ||||| | || || || | || | ||||| Sbjct 4829 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTCTT 4888 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || ||||| ||||| |||||||| Sbjct 4889 ACCAGTTAAGGTTTTAACGAAGATTTGCAT 4918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496056385417600