Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq697 288 1e-72 seq2 224 1e-53 >seq697 Length=10231 Score = 288 bits (318), Expect = 1e-72 Identities = 428/601 (71%), Gaps = 11/601 (2%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| |||||| || || | |||||| ||||||||||| | ||| || || ||||| || | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA---TGACC 50068 | || | |||||||| | ||||| || || |||||||| || || ||||| || | Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 50069 CAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC 50128 | ||||| |||| || || || |||||||||||||| | | || || | || Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 50129 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 ||| ||||| | ||||| |||||||||||||| ||||| || || || || | Sbjct 5776 TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGA 5717 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 |||| || || || | | | ||||| || |||| | || || |||||||| |||| Sbjct 5716 TGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGAC 5657 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | || | || ||||| |||||||||||||| || || || || |||||||||||||||| Sbjct 5656 TGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCT 5597 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTT-CAGCTAAATTTTCATTCACTATTCCGTCA 50367 | | ||| || ||||| | || || | || || | ||||||||| || || || ||| Sbjct 5596 CTGGAATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGT--- 50424 ||||| || ||||| ||||| |||| ||| |||| |||||| ||| | Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 50425 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 50484 || |||||||| |||| |||| | | ||| | |||||| |||||||||| || Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 50485 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTA 50544 || || | ||| ||||| ||||| || |||| | || ||||||||| | ||||||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 50545 T 50545 | Sbjct 5357 T 5357 >seq2 Length=160969 Score = 224 bits (248), Expect = 1e-53 Identities = 1180/1861 (63%), Gaps = 67/1861 (4%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| |||| | | || ||| | ||||| ||||||||||| || || || ||| Sbjct 40045 GTGAATTGGATGGCGTCTGCAGCTGGTCTGGTACGGAGATAGTACATACCGGTCTTGAGA 39986 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| ||| || ||||| || ||||||||| | | || || || ||| Sbjct 39985 CCCTTTTTCCAGGAGTAAAAGTGCATCGATGTGAGTTTGGAAAAGGTGGGCTCAGCAATA 39926 Query 78838 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 || ||| | || | || ||||| || || ||||| || | || || ||||| | || Sbjct 39925 AAGACATTGA-AGCTCTGGCTTTGGTCAATAAAGGCACCACGCTCGGCGGCCATGTCAAT 39867 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA 78955 || || |||| |||||||||| | ||||| || | ||| || | ||| || || | Sbjct 39866 GAGGGTTCTTTGACGAATTTCCCAGACTGTTTTGTAGAGCTCT-TTGAGATCGTCGGGGA 39808 Query 78956 GGTT-TGTAT-TCTGAATGGATCCACCATCTGCC----ATAATCCTATTCTTGATCTCTT 79009 | | || ||| ||||| | | |||| || || |||||||||||| Sbjct 39807 TTTCCTCAATATCT---TGGATACTGCCTCTGTGGAGAATGATTTGGTTCTTGATCTCTG 39751 Query 79010 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 79069 ||||| ||| | | | | | ||||| || ||| || | |||| Sbjct 39750 GCGACCATAGACCAAGCTCCATGAGATCGGTGAGGAGTTGTTTATTTACAATGGTGAATT 39691 Query 79070 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTAT 79129 | || | ||| || | ||| ||||||| || || ||||| || | | ||||| | Sbjct 39690 CACCGGCCAACACACGACGACTGTAAATGTTGGATGTGTATGGCTCAAAGCACTCATTGT 39631 Query 79130 TTCCCAAAATTTGAGCAGTTGATGCCG-TTGGCATAGGTGCCACCAATAAACTATTTCTA 79188 |||| | |||||||| || || || || ||||||| || || | ||| | ||| |||||| Sbjct 39630 TTCCGAGAATTTGAG-AGGTGCTGGCGGTTGGCATTGGGGCAATCAAAAGACTGTTTCTA 39572 Query 79189 AGACCGTATGATCTGATTTTATCTTTTAGAGATT--CCCAATCCCAAAGATCAGACGGGA 79246 |||||| | |||| || || || ||| || |||| |||||| | ||| || Sbjct 39571 AGACCGGTGGCCTTGATCTTTTCCTT--GAGTTTGGCCCAGTCCCAACGTGGAGATGGAG 39514 Query 79247 CAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTT 79306 ||| ||| | |||||||| || ||||| ||| || ||| ||| | |||| Sbjct 39513 TGACACCCCACATGTCATATTGGAGGATACCCTTAGAGGCTGGTGAGCCTTCAAAGGTTT 39454 Query 79307 CATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGG 79366 |||| | || | | || || ||| | || | || | |||| |||| Sbjct 39453 CATAGGCACCGTGGGCAGCAGCCAACTCATTAGAGGCTGTGAGAGCGGCAAAATAGATGG 39394 Query 79367 TTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAG 79425 ||||| ||||| |||||| | | | | || | ||||| || ||| ||| Sbjct 39393 TTTCGGCAATCTCACGATTGAG-TGTGGCAGCGCCAGTAGAGTCAAAAGG-TAAACGAAG 39336 Query 79426 AGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 | ||||| | || || | ||||| | |||| ||| || ||||| |||||| | || Sbjct 39335 GGCGATAAAGACATCGGCGAGACCTTGGATGCCAAGACCAATGGGTCTGTGTCTCATGTT 39276 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCT 79544 || | | | ||| || | ||||| || || | || || || || ||||||||| | Sbjct 39275 GGACACCTTTGATTCGGGCACTGGATAGTAGTTTCTGTCAATGATCTTGTTGAGATTCTT 39216 Query 79545 GACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC---------------- 79588 | ||||| ||| || || | || | || ||| || Sbjct 39215 GGTGATTACCTTGGTTACCTCATAGAGATGTTGATGGTCATATTCCTTTTCTTTGGGGTT 39156 Query 79589 -GT----CCATCTATT---ACAAACATGTT----CAACGCGACAGATGCCAGATTACAAA 79636 || || | | || |||| ||| || ||| || | ||| |||| ||| |||| Sbjct 39155 GGTGGAACCTTGTTTTTGGACAA-CATATTTGGGCAAAGCAATAGAGGCCAAATTGCAAA 39097 Query 79637 CGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAA 79696 |||| || || | | | ||||| | ||||| ||||| ||||| || | || Sbjct 39096 CGGCCACTTCCTCTGGCGAGGTGTATTGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAA 39037 Query 79697 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACG 79756 |||| || | ||||||||||| ||| || || ||||| || || || ||||| | Sbjct 39036 TGGTGCCAAGGTTTTGTTGATTGGATTTTGAATTGCAGGCATCTTTGTAGAGGATGAATG 38977 Query 79757 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 79816 | ||||||||||| || || | ||| | ||| || ||||| | || | || || || | Sbjct 38976 GGGTACCAGTTTCGATTTGGGCTTCGAGAATGGCAAACCAGAGGTCTTGGGCTTTGATCA 38917 Query 79817 TAGACTTGT----ATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCT 79872 | |||| |||| | | ||| ||||||| ||| | | | ||||| || Sbjct 38916 CACGCTTGGCAAGATCTGGTGTGGCTT-CGTATTGGAGATAGAGTTTTCTAAACTCTTCG 38858 Query 79873 CCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCA 79932 | ||| | || ||||| ||||| ||||| | | ||||| || | | Sbjct 38857 CTATGGCACTCGGCCAAGCCAGGGGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTT 38798 Query 79933 TCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 79992 | || |||| || ||||||||| ||| | ||| || || ||| || ||||||| | Sbjct 38797 TGCTCGACTCTTTCCATAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCT 38738 Query 79993 CTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 80052 || ||||| || || |||||||| | ||||| ||| | | |||||| | ||| Sbjct 38737 CTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGC 38678 Query 80053 CACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTAT 80112 || || |||||||| | ||| | | ||| || ||| || || || || | |||| Sbjct 38677 CATGGCTCCAAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTAT 38618 Query 80113 CTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 80172 || || |||| |||| | || | | ||| || | |||||| |||||||| || ||||| Sbjct 38617 CTGGCAGTGTCATTAAAGACACGAAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTG 38558 Query 80173 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCC 80232 || |||||| || | ||||| | || || | | | ||| || || || || Sbjct 38557 CCACGGATATAACTGCTGCTGGCTCTGATCTTGTGACAGGCGATACCAATGCCACCGGCA 38498 Query 80233 ATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCA 80292 |||| ||| | || || |||| | || |||||||| || ||||| || || Sbjct 38497 GATTTACTGATGAGGGCACACTGTTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCC 38438 Query 80293 ATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTTCCCGCATTAAATAA 80351 |||| | | || ||||| || ||||| || | | | | || |||| ||||| | Sbjct 38437 TTCATTTGCACGAGGAAACAACTTGACATCTGAGGGTTGGGT-GTACCCGAGTTAAAGAG 38379 Query 80352 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGA 80411 ||| || | ||||| ||||| |||| || |||| ||| ||||| | ||| | Sbjct 38378 GGTGGGGGTGGCGTGGGTAAAGAGCTTTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGC 38319 Query 80412 TTCTATATC----CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTC 80467 || | ||| || | |||| || | || |||||||||||||||||| || || | Sbjct 38318 GTCCAAATCGTCGCCGTGGATG----CCCAACGAGACACGCATTAACATGTGTTGGGGAC 38263 Query 80468 TTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAA 80527 |||| ||||| | ||| | | | ||||||| | | || | || || || |||| Sbjct 38262 GCTCAATGATCTGGCCATTGACTCTTTGCAAGTAACTTCTCTCGAGTGTCTTGAAGCCAA 38203 Query 80528 A 80528 | Sbjct 38202 A 38202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257774573920