Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq697 165 8e-36 >seq697 Length=10231 Score = 165 bits (182), Expect = 8e-36 Identities = 401/598 (67%), Gaps = 16/598 (3%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||| | || || || ||||| || | ||| || || ||||| || ||||| Sbjct 5948 AAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 5889 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA---TGACCCGGAA 13985 || || |||||||| || ||||| || | |||||| || | |||||| || | | ||| Sbjct 5888 AAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAAAACTGCCGCTGAA 5830 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 || ||| ||||| || || ||||| || | ||| ||||| |||| ||| || || Sbjct 5829 AAAGATA--CCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGAT---TTGCTG 5775 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 || | |||||| | ||||| || | || ||||| | | | || || || || Sbjct 5774 TTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATG 5715 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCT 14164 || || |||| | ||| || | |||| | |||| || || || | | || Sbjct 5714 GCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGA-TGTAGGTGTCGATCAAGAGACT 5656 Query 14165 ATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC 14224 || | || || || |||||||| || || || || || ||||| || |||||||| || Sbjct 5655 GTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCTC 5596 Query 14225 CGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | ||| ||||| | |||| | | | ||| | ||||||||| || |||||||||| Sbjct 5595 TGGAATTTGAACTTCACTCATAAACTTTGT-GGCAAGATTTTCATTGACAATACCATCAC 5537 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT---T 14340 | || || ||||| ||||| | || || || || | || | || || | | | Sbjct 5536 TGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTCT 5477 Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 | ||||||||| | ||| | | ||| | ||| || ||||||||||||| || Sbjct 5476 TGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCTT 5417 Query 14401 CAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCT 14458 |||||| ||| ||||| |||||| || || | | || || || | |||||||| Sbjct 5416 CAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCT 5359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479720636175200