Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq697 179 4e-40 >seq697 Length=10231 Score = 179 bits (198), Expect = 4e-40 Identities = 407/602 (68%), Gaps = 24/602 (4%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| ||||| | || || || ||||| || | ||| || || ||||| || ||||| Sbjct 5948 AAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGAATGTC 5889 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAA 13775 || || |||||||| || ||||| || | |||||| || | ||| || | ||| || Sbjct 5888 AAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAAAACTGCCGCTGAA 5830 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 || || ||||| || || ||||| || | || ||||| |||| ||| || |||| Sbjct 5829 AAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGAT---TTGCTGTT 5773 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 | |||||| | ||||| || | || ||||| | | | || || ||||| || Sbjct 5772 GGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGATGGC 5713 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTAC------TTGAAATGTATGTATCAATAAGTAA 13949 ||||||| ||| | |||||| || ||| | |||| || || || | | Sbjct 5712 GTTGAATA---GTT--TGCTCTTTTCCACGCTGTCTTGGA-TGTAGGTGTCGATCAAGAG 5659 Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009 || || | || || || |||||||| || || || || || ||||| ||||||||||| Sbjct 5658 ACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGC 5599 Query 14010 TTCTGACCATTGTACCTCCGAGTAA-AATCTTTCTGCCAAG-TTTTCATTAACAATACCA 14067 |||| ||| || || | | | || |||| || |||| |||||||| ||||||||| Sbjct 5598 CTCTGGAATTTGAACTTC--ACTCATAAACTTTGTGGCAAGATTTTCATTGACAATACCA 5541 Query 14068 TCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGT 14127 ||||| || || ||||| ||||| | || || || || | || | || || | | Sbjct 5540 TCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAAT 5481 Query 14128 ---TTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14184 || ||||||||| | ||| | | ||| | ||| || ||||||||||||| Sbjct 5480 TTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTG 5421 Query 14185 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14244 || |||||| ||| ||||| |||||| || || | | || || || | |||||| Sbjct 5420 GCTTCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAAT 5361 Query 14245 CT 14246 || Sbjct 5360 CT 5359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478581453661920