Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq57 107 1e-18 seq79 102 6e-17 seq1179 96.9 3e-15 >seq57 Length=71319 Score = 107 bits (118), Expect = 1e-18 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||||| ||| |||||||| | ||||| || || || ||||| Sbjct 43425 AGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGA 43484 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||||||||| || ||||| || || || |||||||||| || | ||||||| Sbjct 43485 CCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCT 43544 Query 43012 TTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCC-TCGACGTCTACC 43068 || || ||| | | | ||| || | ||| ||||| |||| || || || | Sbjct 43545 TTGTC-TTGAATTTTAGT-TTTAACATTTTCAATGGTGTC-TGAGCCTTCTACTTCAAGA 43601 Query 43069 GTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| || || |||||||| |||||||||||||| Sbjct 43602 GTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||| | |||| || ||||| | |||||||| || || || | Sbjct 43881 AGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTA 43940 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || |||||||| ||||| ||||| || || |||||||||| || | ||||||| Sbjct 43941 CCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCT 44000 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGT 43070 || || ||| ||||| | ||| ||||| ||||| |||| || | || Sbjct 44001 TTGTCTTGAATCTTGGTCTTGACGTTTTCAATAGTGTCTG-AGCCTTCGACTTCAAGAGT 44059 Query 43071 TATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || || | || || || ||||||||||| Sbjct 44060 AATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 >seq79 Length=61457 Score = 102 bits (112), Expect = 6e-17 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | |||| || ||||| | ||||| || || || || | | || || Sbjct 11001 ACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCTTCT 11060 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| |||||||| || || || |||||||||| || | ||||||||| || || Sbjct 11061 AATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT-TG 11119 Query 43021 A--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTT 43077 | | | ||||| || | ||| || || ||||| |||| || | || || ||| Sbjct 11120 AATTTTAGTCTTT-ACATTTTCAATAGTATCAG-AGCCTTCGACTTCAAGGGTGATGGTT 11177 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || |||| |||||| ||||||||||||||| Sbjct 11178 TTGCCAGTTAAAGTTTTAACAAAAATTTGCATT 11210 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||||| ||| || ||||| | ||||| || || || ||||| Sbjct 10536 AGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGA 10595 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 |||| || |||||||| ||||| ||||| | || |||||||||| || | ||||||| Sbjct 10596 CCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCT 10655 Query 43012 TTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACC 43068 || || ||| | | ||||| || | ||| || || ||||| | || || | Sbjct 10656 TTGTCT-TGAATTTTAGTCTTT-ACATTTTCAATAGTATCAG-AGCCTTCAACTTCAAGG 10712 Query 43069 GTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| || |||| |||||| || ||||||||||| Sbjct 10713 GTGATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 Score = 95.1 bits (104), Expect = 9e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||||| ||| || ||||| | |||||||| || || ||||| Sbjct 10308 AGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGA 10367 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || |||||||| || || ||||| || || || |||||||||| || | ||||||| Sbjct 10368 CCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCT 10427 Query 43012 TTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCG 43069 || || ||| | | | ||| || | ||| ||||| | | ||||| || | | Sbjct 10428 TTGTCT-TGAATTTTAGT-TTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAG 10485 Query 43070 TTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || ||||| || || | ||||| || ||||||||||| Sbjct 10486 TAATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||| | ||| || ||||| | ||||| || || || || | Sbjct 10764 AGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTA 10823 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || |||||||| ||||||||||| || || |||||||||| || | ||||||| Sbjct 10824 CCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCT 10883 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| || || | ||| ||||| | | ||||| || | || Sbjct 10884 TTGTCTTGGATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTA 10943 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || || || | ||||| || ||||||||||| Sbjct 10944 ATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 >seq1179 Length=2421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||| | |||| || ||||| | ||||| || ||||| || | |||| ||| Sbjct 2183 ACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTCC 2124 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || ||||| || || || |||||||||| || | ||||||||| || || Sbjct 2123 AATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATC-TTG 2065 Query 43021 A--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCC-TCGACGTCTACCGTTATAGTT 43077 | | | || ||||| | ||| ||| || |||| || || || | || || ||| Sbjct 2064 AATTTTAGTC-TTGACGTTATCAATTGTATC-AGAGCCTTCAACTTCAAGGGTGATGGTT 2007 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || || |||| ||||| || |||||||||||| Sbjct 2006 TTACCAGTTAAGGTTTTAACGAAAATTTGCATT 1974 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | ||||| || | |||| || ||||| | || || || || || || | Sbjct 2420 AGTCTAAGTACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTA 2361 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||||||||| || |||||||| | || |||||||||| || | ||||||| Sbjct 2360 CCATCTTCCAATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCT 2301 Query 43012 TTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCG 43069 || || ||| | | | ||| || | ||| ||| ||| | | || || || | | Sbjct 2300 TTATC-TTGAATTTTAGT-TTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGG 2243 Query 43070 TTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||||||| || || | ||| || |||||||||||||| Sbjct 2242 TGATAGTTTTACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381363892327224