Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq697 260 2e-64 seq2 185 1e-41 >seq697 Length=10231 Score = 260 bits (288), Expect = 2e-64 Identities = 422/601 (70%), Gaps = 11/601 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| |||||| || || | |||||| |||||||| || | ||| || | ||||| || | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAA---TGATC 42173 | || | |||||||| | ||||| || || |||||||| ||||| ||||| || Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 42174 CAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 42233 | ||||| |||| || || || || |||||||||| | | || || | | Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 42234 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 ||| ||||| | ||||| |||||||||||||| ||||| || || || || | Sbjct 5776 TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGA 5717 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 |||| || || || | | | ||||| || |||| | || || |||||||| |||| Sbjct 5716 TGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGAC 5657 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 | || | |||||||| |||||||||||||| || || || || ||||||||||| |||| Sbjct 5656 TGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCT 5597 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTT-CAGCTAAATTTTCGTTCACTATTCCGTCA 42472 | | || || ||||| | || || | || || | |||||| || || || || ||| Sbjct 5596 CTGGAATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT--- 42529 ||||| || ||||| ||||| |||| ||| ||||| ||||| ||||| Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 42530 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 || |||||||| |||| |||| | | ||| | |||||| | |||||||| ||| Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTA 42649 || || | ||| ||||| ||||| ||||||| | || |||||||| | ||||||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 42650 T 42650 | Sbjct 5357 T 5357 >seq2 Length=160969 Score = 185 bits (204), Expect = 1e-41 Identities = 573/879 (65%), Gaps = 17/879 (2%) Strand=Plus/Minus Query 71694 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAAT 71753 ||| |||| ||| |||| ||| |||||||| || || | | || ||||| | || Sbjct 39122 CAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGAT 39063 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 ||| |||||||| || || | ||||| || | ||||||||||| ||| || Sbjct 39062 TTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATT 39003 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || ||||| || || || || || || ||||||||||| || || | ||| | ||| || Sbjct 39002 GCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGC 38943 Query 71874 TTTCCAGACGACTCGAGCCTTTATTATATTCTTGT----ATCTCTTTTCTCTTTCGTATT 71929 ||||| | || | || || || | | |||| |||| | | ||| |||||| Sbjct 38942 AAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCTT-CGTATT 38884 Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTC 71988 | ||| | | | ||||| || | ||| | | | || ||||| ||| || Sbjct 38883 GGAGATAGAGTTTTCTAAACTCTTCGCTATG-GCACTCGGCCAAGCCAGGGGCTTCGTTG 38825 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 ||||| | | ||||| || | | | | |||| || ||||||||| ||| | | Sbjct 38824 GGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGACC 38765 Query 72049 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 72108 || || || ||| || ||||||| ||| ||||| || || |||||||| | | Sbjct 38764 CAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAA 38705 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 |||| ||| | | |||||| | ||||| || |||||||| | ||| | | ||| Sbjct 38704 TCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTT 38645 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 | ||| || || || || | |||||| || |||| |||| | || | | ||| || Sbjct 38644 CTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGG 38585 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTG 72288 | |||||| ||||||| || ||||| || |||||| || | ||||| | || ||| Sbjct 38584 ACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTG 38525 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 | | | ||| || || || || |||| ||| | || || |||| | || Sbjct 38524 TGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTG 38465 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG- 72407 |||||||| || ||||| || ||| |||| | | || ||||| || ||||| || Sbjct 38464 TCATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGA 38405 Query 72408 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 72467 | | | | || |||| ||||| | ||| || | ||||| ||||| |||| Sbjct 38404 GGGTTGGGT-GTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCTTTTGGCT 38346 Query 72468 CAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGTATTCCTACCG 72523 || |||| ||| ||||| | ||| | || | ||| || | |||| || | || Sbjct 38345 GAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATG----CCCAACG 38290 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 ||||||||||||||| || || || | |||| ||||| Sbjct 38289 AGACACGCATTAACATGTGTTGGGGACGCTCAATGATCT 38251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128898013280