Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq79 134 1e-26 seq57 123 3e-23 seq1179 122 9e-23 seq778 104 2e-17 seq298 102 8e-17 >seq79 Length=61457 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | |||||||||||||| ||||||||||| | || | ||||| Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| ||||||||| |||| | |||||| |||||||| || || ||||||||||| | Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 10435 Query 143096 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 | |||| |||||| | | ||| | ||||| | ||| ||||||| ||| | || || Sbjct 10436 AATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTT 10495 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 10496 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10526 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||||| |||||||||||||| |||||||| || | || || ||||| Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 10832 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||||||| ||| | || | |||||| |||||||| || || ||||||||||| | Sbjct 10833 AATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TTG 10891 Query 143096 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 | || || ||| | | ||| | ||||| | ||| ||||||| ||| | ||||| Sbjct 10892 GATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTT 10951 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| ||||| ||||| ||||||||| Sbjct 10952 ACCAGTCAAGGTTTTGACGAAAATTTGCATA 10982 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | || ||||||| || ||||||||||| |||||||| || Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||| ||| |||| | |||||| |||||||| || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| |||| | ||| | || || | | ||| ||| Sbjct 11103 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACT 11162 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || ||||| || || ||||| || || |||||||| Sbjct 11163 TCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||| | |||||||||||||| |||||||| || | || | |||||| Sbjct 10544 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTC 10603 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||| || | || || | ||| |||||||| || || ||||||||||| Sbjct 10604 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 10663 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| |||| | ||| | || || | | ||| ||||||| || | || || Sbjct 10664 AATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTTT 10723 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || ||||| ||||| ||||||||| Sbjct 10724 ACCAGTTAAAGTTTTGACGAAAATTTGCATA 10754 >seq57 Length=71319 Score = 123 bits (136), Expect = 3e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||| | |||||||| ||||| |||||||| || | || | || || Sbjct 43433 AACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTC 43492 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||||||| |||| | |||||| |||||||| || || ||||||||||| | Sbjct 43493 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TT 43551 Query 143095 AATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 | |||| |||||| | | ||| | ||||| | | ||||||||||| ||| | || | Sbjct 43552 GAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGTTT 43611 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || | ||||| || || ||||||||| Sbjct 43612 TACCAGTGAGAGTTTTAACAAAAATTTGCATA 43643 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||||| || ||||||||||| ||||||||||| | || || ||||| Sbjct 43889 AACTAAATGAAGAGTGGATTCTTTTTGGATGTTGTAATCAGATAAAGTTCTACCATCTTC 43948 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||| || | || | |||||| |||||||| || || ||||||||||| Sbjct 43949 TAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTG 44008 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | ||| | ||||| | | ||| ||||||| ||| | || || Sbjct 44009 AATCTTGGTCTTGACGTTTTCAATAGTGTCTGAGCCTTCGACTTCAAGAGTAATGGTTTT 44068 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| || || ||||| ||||||||| Sbjct 44069 ACCAGTCAAGGTCTTGACGAAAATTTGCATA 44099 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||| | |||||||||||||| ||||| || || | || | |||||| Sbjct 43662 ACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTCT 43721 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||||||| || | || || | ||| |||||||| || || ||||||||||| | Sbjct 43722 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 43780 Query 143096 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 | | || |||||| | | ||| | || || | ||| ||||||| ||| | ||||| Sbjct 43781 AATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGTCTT 43840 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| || || ||||| ||||||||| Sbjct 43841 ACCAGTCAAGGTCTTAACGAAAATTTGCATA 43871 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||||||||| | |||||||| ||||| ||||| || || | || | |||||| Sbjct 42977 AACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTC 43036 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||||||| | || | |||||| |||||||| || || ||||||||||| Sbjct 43037 TAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTG 43096 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | ||| | || || | | ||| ||||||| || | || || Sbjct 43097 AATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGTTTT 43156 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| || || ||||| ||||||||| Sbjct 43157 ACCAGTCAAGGTCTTGACGAAAATTTGCATA 43187 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTT 143033 ||||||||| | |||||||||||||| || |||||||| || || | || | |||| Sbjct 43205 AACTAAATGGAGAGTAGATTCTTTTTGGATATTGTAATCAGACAAGGTACGTCCA-TCTT 43263 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 | | ||||||||| || | || | |||||| |||||||| || || ||||| || || Sbjct 43264 CTAATTGTTTACCGGCGAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCCTTATCTT 43323 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 ||| || || | | ||| | || || | ||| ||||| | || | |||| Sbjct 43324 GAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCGAGGGTAATGGTCT 43383 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || ||||| || || ||||| ||||||||| Sbjct 43384 TACCAGTCAAGGTCTTAACGAAAATTTGCATA 43415 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||||||||| || ||||||||||| || ||||| || | || || ||||| Sbjct 44118 ACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGATAAAGTTCTACCATCTTCT 44177 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||||||||||| | || || | ||| |||||||| || || ||||| || || | Sbjct 44178 AATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATCTTGA 44237 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || | | ||| | || || | ||| ||||||| || | || || Sbjct 44238 ATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGACTTCAAGGGTAATGGTTTTA 44297 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||||| || || ||||||||| Sbjct 44298 CCAGTGAGAGTTTTAACAAAAATTTGCATA 44327 >seq1179 Length=2421 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | | ||||||||||| || ||||||||||| |||||||| || | Sbjct 2201 CCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2142 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||||||||| ||| |||| | |||||| |||||||| || Sbjct 2141 AAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGG 2082 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| || | | || | || || | | ||| ||| Sbjct 2081 ATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACT 2022 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || || ||||| ||||| |||||||| Sbjct 2021 TCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || ||||||||||| ||||| || || | || || ||||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||||||||| ||| | || || | ||| |||||||| || || |||||||| || | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATC-TTG 2293 Query 143096 ATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 | |||| |||||| | | || | || || | ||| ||||||| || | || || Sbjct 2292 AATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTT 2233 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || ||||| || || || || ||||||||| Sbjct 2232 ACCAGTCAAAGTCTTGACAAAAATTTGCATA 2202 >seq778 Length=8042 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 |||||| || | || ||||||||||| |||||||| || | || || ||||| Sbjct 4709 AACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTC 4768 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||| ||| |||| | |||||| |||||||| || || ||||||||||| Sbjct 4769 TAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 4828 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | ||||| | ||| ||||| | ||| | ||||| Sbjct 4829 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTCTT 4888 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || ||||| ||||| |||||||| Sbjct 4889 ACCAGTTAAGGTTTTAACGAAGATTTGCAT 4918 >seq298 Length=27992 Score = 102 bits (112), Expect = 8e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| |||| |||||||||||||| |||||||||||| | || | |||||| Sbjct 13193 ACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGACCGTCTTCT 13252 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 | ||||||||||||| |||| || | ||| |||||||| || || ||||||||||| Sbjct 13253 AATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTC 13308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006617328960