Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq697 113 7e-20 seq2 107 3e-18 >seq697 Length=10231 Score = 113 bits (124), Expect = 7e-20 Identities = 367/564 (65%), Gaps = 11/564 (2%) Strand=Plus/Plus Query 125014 ATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCG 125073 |||| || ||| | ||||||||| | ||| | ||| |||||||| | |||||| | | Sbjct 5387 ATGATATATGGAAGATGTACAAACAAGCTGAAGCCAGTTTTTGGACAGCCGAAGAAATTG 5446 Query 125074 ATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTA 125133 || || | || || |||||||| | | || | ||| | || || | || | Sbjct 5447 ATTTGGCACCAGATCTCAACGATTGGAACAAGAAATTAAATGATAACGAACGTTATTTCA 5506 Query 125134 TATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGA 125193 |||| | |||||||||| || || | | ||||| || ||||| || ||||| || Sbjct 5507 TATCCAATGTTTTGGCCTTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCT--TGC 5564 Query 125194 CACGATTCTCTCAAG---AGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAA 125250 ||| | | || |||| | |||||||||| || || || || ||||||| Sbjct 5565 CACAAAGTTTATGAGTGAAGTTCAA-ATTCCAGAGGCTAGATGTTTCTATGGCTTCCAAA 5623 Query 125251 TCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCG 125310 | ||||| ||| | || || || | ||| | |||| |||| ||||| | | Sbjct 5624 TTGCCATTGAAAACATCCATTCAGAGACCTACAGTCTCTTGATCGACACCTACATCCAAG 5683 Query 125311 ATCCGCAACGTAAACA-CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 | | || | ||| | || || || ||||| ||||| || | || | | | || Sbjct 5684 A-CAGCGTGGAAAAGAGCAAACTATTCAACGCCATCGAGACCATCCCCTGTGTGAAAAAG 5742 Query 125370 AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTG 125429 ||||| | |||| | | |||||| || ||| || | ||||| | | Sbjct 5743 AAGGCCGACTGGGCATTGAGATGGATCACCAACAGCAAATCATTT---GCCGAACGTTTA 5799 Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || |||||||| ||||| ||||| || || |||||| | ||||||||| Sbjct 5800 GTTGCCTTTGCCGCCGTCGAGGGTATCTTTTTCAGCGGCAGTTTTTGCTCTATCTTTTGG 5859 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||| || || | |||||||| |||| | ||||||| | || ||| ||| Sbjct 5860 CTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCTCTAACGAGCTCATCAGTCGTGAC 5919 Query 125550 GAGGGCCTACACTGTGACTTTGCC 125573 ||||| || ||||| |||||||| Sbjct 5920 GAGGGTCTCCACTGCAACTTTGCC 5943 >seq2 Length=160969 Score = 107 bits (118), Expect = 3e-18 Identities = 137/184 (74%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGA-CGCTGATCGATATGGCTGCCGACAGA 98096 ||||||| || |||||||| |||| | | |||| | || || || ||||| ||||| | Sbjct 39829 TCTACAAAACAGTCTGGGAAATTC-GTCAAAGAACCCTCATTGACATGGCCGCCGAGCGT 39887 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| || |||||||| || || |||||| | | |||| |||||||||| | Sbjct 39888 GGTGCCTTTATTGACCAAAGCCAGAGCTTCAATGTCTTTATTGCTGAGCCCACCTTT--T 39945 Query 98157 CGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 | | | || ||||| ||||||||| | ||||| ||||| |||||||| || ||||||| Sbjct 39946 CCAAACTCACATCGATGCACTTTTACTCCTGGAAAAAGGGTCTCAAGACCGGTATGTACT 40005 Query 98215 ATCT 98218 |||| Sbjct 40006 ATCT 40009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047824741280