Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1179 89.7 4e-13 seq79 84.2 2e-11 >seq1179 Length=2421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || || |||||||| || || || | | ||| | | || ||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | |||||||| ||| |||||||||| || ||||| || | || ||||| || | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 2292 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | | |||||| | || ||| | ||| || |||||| Sbjct 2291 ATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTTA 2232 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| ||||||||||||||||| Sbjct 2231 CCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 >seq79 Length=61457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||| || ||||| || | | || |||| || | |||||||| Sbjct 10557 GTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTCTAATTGTTTACCG 10616 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| ||||| || ||||| || | || |||||||| |||||| ||| Sbjct 10617 GCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGAATTTTAGTCTTT 10676 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGT-TTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | | |||||| || || | ||| | ||| ||||||||||| |||||||| Sbjct 10677 ACATTTTCAATAGTATCAG-AGCCTTCAACTTCAAGGGTGATGGTTTTACCAGTTAAAGT 10735 Query 19024 TTTGACAAAAATTTGCAT 19041 |||||| ||||||||||| Sbjct 10736 TTTGACGAAAATTTGCAT 10753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414566595399832