Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1179 107 1e-18 seq57 96.9 2e-15 >seq1179 Length=2421 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||||||||||| ||||| || ||| | |||| ||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| |||||||| || | | ||| || || | || | ||||||||||||| | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 2292 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||| || || ||| ||||| | || || || | || || |||||| Sbjct 2291 ATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTTA 2232 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||| ||||| |||||||| Sbjct 2231 CCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| ||||| | || ||||| || ||| ||||||||||| || || || Sbjct 2202 ACCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGA 2143 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || ||||||||||| |||||||| || || ||||| || || | || Sbjct 2142 CAAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGG 2083 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| |||||| ||||| || ||| ||||| | || || Sbjct 2082 GATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAAC 2023 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || |||||||| ||||| || || || || |||||||| Sbjct 2022 TTCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 >seq57 Length=71319 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || ||||| || || || ||||| || || || || Sbjct 43415 ACCACCTCTGAGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGA 43474 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| ||||||||||| || ||||| || || ||||| || || | || Sbjct 43475 TAAAGTACGACCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGG 43534 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| ||| |||||| ||| || | ||| || |||| || || Sbjct 43535 GATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTAC 43594 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||| || ||||| |||||||| Sbjct 43595 TTCAAGAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||| | || ||||| || ||| |||||||||||||| || || Sbjct 44099 ACCACCTCTGAGTCTGAGGACTAAATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGA 44158 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || |||||||| || ||||| || | | ||| || || | || Sbjct 44159 TAAAGTTCTACCATCTTCTAATTGTTTACCAGCAAAAATAAGTCTTTGTTGATCGGGTGG 44218 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||| || ||||| | | | ||||| | || || Sbjct 44219 GATACCTTCCTTATCTTGAATCTTGGTCTTGACATTTTCGATGGTATCAGAACCTTCGAC 44278 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| || | ||| || ||||| |||||||| Sbjct 44279 TTCAAGGGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 44326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354772290309744