Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1179 120 3e-22 seq79 116 3e-21 seq57 93.3 4e-14 seq298 87.8 2e-12 >seq1179 Length=2421 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||||||||| ||||| || || | ||| || ||||||| Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAGATAAGGTTCTACCATCTTCC 2352 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| ||||||| || ||||||||| || | |||||||| || | Sbjct 2351 AATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTTGA 2292 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| | |||| | ||| ||| | ||| || ||||| Sbjct 2291 ATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTTTA 2232 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || ||||||||||||||||| Sbjct 2231 CCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 Score = 102 bits (112), Expect = 7e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | || ||||| || || ||||||||||| |||||||| || | Sbjct 2201 CCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 2142 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| || |||||||||||||| || ||| | || | | ||||||||| || Sbjct 2141 AAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGG 2082 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTTCC 20158 | |||||||| || |||||| || || | ||| | ||| ||| ||| Sbjct 2081 ATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCC---TTCA 2025 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||| |||||||| || || || ||||| || |||||||||||| Sbjct 2024 ACTTCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCATT 1974 >seq79 Length=61457 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| || | |||||||| || || ||||||||||| |||||||| || Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || |||||| |||||||| || ||| | || | | ||||||||| || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTTCC 20158 | ||||||||||| |||||| || || | ||| || ||| ||| ||| Sbjct 11103 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCC---TTCG 11159 Query 20159 GTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||| ||||||||||| || || ||||| ||||||||||||||| Sbjct 11160 ACTTCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCATT 11210 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || |||||||||||||| ||||||||||| | ||| | ||||||| Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || ||| | || | | ||||||||| || | ||||||||||| | Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 10436 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| | || | ||| ||| | ||||||||||| Sbjct 10437 ATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTTA 10496 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||| ||||||||||| Sbjct 10497 CCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || |||||||||||||| |||||||| || | ||| | ||||| Sbjct 10545 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTCT 10604 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| || || ||||||||| || | ||||||||||| | Sbjct 10605 AATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGA 10664 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| || || | ||| || ||| ||| ||| ||| | ||| |||||| Sbjct 10665 ATTTTAGTCTTTACATTTTCAATAGTATCAGAGCC---TTCAACTTCAAGGGTGATGGTT 10721 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || || |||||||| ||||||||||| Sbjct 10722 TTACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || |||||||||||||| |||||||| || | |||| || |||||| Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 10832 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| |||| | | ||||||||| || | ||||||||||| Sbjct 10833 AATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGG 10892 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || || || | ||| | || | ||| ||| | ||||| || || Sbjct 10893 ATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTTA 10952 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| |||||||| ||||||||||| Sbjct 10953 CCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 >seq57 Length=71319 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || |||||||||||||| ||||| || || | ||| | ||||| Sbjct 43662 ACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTCT 43721 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || ||||||| || ||||||||| || | ||||||||||| | Sbjct 43722 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGA 43781 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || ||| || | ||| | ||| | ||| ||| | |||||||| || Sbjct 43782 ATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGTCTTA 43841 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || || || ||||||||||| Sbjct 43842 CCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || ||||| || |||||||| ||||| |||||||| || | ||| | ||| ||| Sbjct 43434 ACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTCC 43493 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || ||| | || | | ||||||||| || | ||||||||||| | Sbjct 43494 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGA 43553 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTTCCGTTTCCACGGTAATGGTT 20176 ||||| ||| || | ||| | || ||| ||| ||| | ||||||||| Sbjct 43554 ATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCC---TTCTACTTCAAGAGTAATGGTT 43610 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || || || | ||||| |||||||||||||| Sbjct 43611 TTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 >seq298 Length=27992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 || || || || |||||||||||||| |||||||||||| | ||| | ||||| Sbjct 13193 ACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGATAAAGTACGACCGTCTTCT 13252 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||| || ||| | ||||| || ||||||||| ||| | ||||||||||| Sbjct 13253 AATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGGGGATACCTTCTTTGTC 13308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419580920353068