Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq697 150 2e-31 >seq697 Length=10231 Score = 150 bits (166), Expect = 2e-31 Identities = 387/578 (67%), Gaps = 20/578 (3%) Strand=Plus/Minus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || ||| ||||| | ||||| | || || || | ||| || |||||||| || | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC--C 13260 |||| | ||| ||||| | || ||||| || | |||||| |||| |||||| ||| | Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAG-AGCAAA--AACTGC 5837 Query 13261 CGaa-aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTAT 13319 || ||||| || || || || || ||||| || | || | ||| || | | | Sbjct 5836 CGCTGAAAAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 13320 TTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 | || | ||||| | ||||||| || || | ||| || ||| || | | Sbjct 5776 TGTTGGTG---ATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCT 5720 Query 13380 CTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA 13439 | || ||||| |||| | | |||||| |||||| || || || || ||||| | Sbjct 5719 CGATGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGA 5660 Query 13440 AGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAG 13499 || || | |||||||| || ||||| || || |||||||| ||||| |||||||||| Sbjct 5659 GACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAG 5600 Query 13500 CCTCTGATACCTGAACTTCGGAGT-AAAATCTTTCTGCTAAG-TTTTCGTTAACTATCCC 13557 |||||| | |||||||| | | | || |||| || ||| ||||| || || || || Sbjct 5599 CCTCTGGAATTTGAACTTC--ACTCATAAACTTTGTGGCAAGATTTTCATTGACAATACC 5542 Query 13558 GTCACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAAAttttttttCGTTTTC---T 13612 ||||| ||||| ||||| || || || | | || || | |||||| || | Sbjct 5541 ATCACTGGCAGCGAAAAAGGCCAAAACATTGGAT--ATGAAATAACGTTCGTTATCATTT 5484 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 | ||| |||||| | |||| || ||||| | || || | ||||||||| Sbjct 5483 AATTTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAA 5424 Query 13673 GAAGCAACAGCCTTCTTATACATCATCCATATATCCTT 13710 || |||| | || |||||| |||||||||| || Sbjct 5423 CTGGCTTCAGCTTGTTTGTACATCTTCCATATATCATT 5386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430975949809656