Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq57 84.2 2e-11 >seq57 Length=71319 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||||||| || || |||||||| |||||||| |||| || || | |||||| Sbjct 43434 ACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTCC 43493 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | || ||||| | | |||||||| || ||||| || | || ||| ||||| | Sbjct 43494 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTGA 43553 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCT-CGACTGTTATGGTTTT 48696 ||||| || | | | ||||| || | || || | || | | || |||||||| Sbjct 43554 ATTTTAGTTTTAACATTTTCAATGGTGTCTG-AGCCTTCTACTTCAAGAGTAATGGTTTT 43612 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||||||||| |||||||| ||||| Sbjct 43613 ACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244895449228