Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq529 114 2e-20 seq72 111 2e-19 >seq529 Length=15923 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19356 TACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGA 19415 ||||| |||| ||||||||||| ||||| | || |||||| || || ||||||||| Sbjct 12412 TACCTCAAATTGGTGATAAGTTCTCTTCTCGTCATGGTCAAAAGGGTACCTGTGGTATGG 12353 Query 19416 TTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTA 19475 |||||||||||||||| | ||||| ||| || ||| | || || ||| ||||| | | Sbjct 12352 CTTATCGTCAAGAAGATTTACCTTTCACTGTTGAAGGTGTCGTACCAGATATTATTGTAA 12293 Query 19476 ACCCACATGCTTTTCCAAGTCGAATGAC 19503 | || |||||| ||||| ||| ||||| Sbjct 12292 ATCCTCATGCTATTCCATCTCGTATGAC 12265 >seq72 Length=63867 Score = 111 bits (122), Expect = 2e-19 Identities = 399/618 (65%), Gaps = 22/618 (4%) Strand=Plus/Plus Query 164390 TAAATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTT 164449 || ||||| |||||||| | ||||| | ||||| | ||| ||| ||| ||||| Sbjct 9830 TAGATTGGGATTTTGAAAATATGGGTATCGGTGGTTTGGATGCAGAGTTTAGAGATATTT 9889 Query 164450 TCAGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGT- 164508 | ||||| ||||||||||| | |||| | || |||| ||||| || ||| Sbjct 9890 TTAGACGTGCATTTGCTTCACGTGTCTTTCCACCCTCTATTGTAAAGAAATT-GGGTGTC 9948 Query 164509 AAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCT 164568 || ||| | || || || || || |||| || || ||| ||||| ||||| || || Sbjct 9949 AATCATGTCAAGGGTATGTTGTTGTATGGCCCACCAGGTACTGGTAAGACATTGATTGCC 10008 Query 164569 CGATGCATTGCTCAAGCTTTTAAATCG---CGACCCGTTAAAATTGTTAATGGT-CCTGA 164624 || |||| | || | || ||| | || || || |||||| ||| ||| Sbjct 10009 AGACAAATTGGT-AAAATGTTGAATGGAAAGGAACC--AAAGATTGTTGCAGGTCCCTCT 10065 Query 164625 ATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGC 164684 ||| || || || ||||| ||| | || |||| ||| ||||| |||||| ||| || Sbjct 10066 ATT-TTAAATAAGTATGTTGGTCAATCTGAAGAGAATATTAGAGCATTGTTTTTGGATGC 10124 Query 164685 TGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGA 164744 |||| || |||||| || ||| | | ||||| | ||| |||||||||| Sbjct 10125 TGAAATGGAGCAAAAGCAAAAGGGTGATGATTCAGGTCTACATATCATTATTTTTGATGA 10184 Query 164745 GATAGATGCTCTTTGCAA------------AAAACGTGGTGATAATATTATTCATGATGC 164792 | ||||| ||||||| | | |||||||| | || |||| | Sbjct 10185 ATTGGATGCCATTTGCAAGAGCAGAGGCAGCAGAGCTGGTGATACAGGTGTTGGTGATTC 10244 Query 164793 AGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAAT 164852 | || ||||| ||||| | ||||| |||||||| || || ||||| || || | | Sbjct 10245 CATTGTCAATCAATTGCTCACCAAAATCGATGGTGTCGAGTCGTTAAACAACATCCTCGT 10304 Query 164853 TGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATT 164912 | ||||||||||| || ||| | |||||||| ||| | | || || ||||| | Sbjct 10305 CATTGGTATGACCAATAGAAAGGATATGATTGATGAGGCTCTTCTCCGTCCAGGTCGTCT 10364 Query 164913 AGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGT 164972 || | | | || || | || ||| || | || | |||||||||| || | Sbjct 10365 CGAGGTCCATGTCGAGATTTCTCTTCCAGACGAACACGGTAGAGTTCAAATTTTCAAGAT 10424 Query 164973 TCATGTGGCTAAAATGAA 164990 |||| || |||||||| Sbjct 10425 TCATACAGCCAAAATGAA 10442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595862853364800