Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq79 127 2e-24 seq57 118 1e-21 seq1179 113 4e-20 seq778 109 5e-19 seq298 84.2 2e-11 >seq79 Length=61457 Score = 127 bits (140), Expect = 2e-24 Identities = 174/241 (72%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| |||| | ||||| || | ||| ||||| ||||| | | Sbjct 10971 AAAATTTGCATACCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATG 11030 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || ||| ||| | ||| || | ||||| ||| |||||||||| | || Sbjct 11031 TTGTAGTCAG--ATAAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTT 11088 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| || || |||||||||||||| | |||||| | ||| || | | ||| | Sbjct 11089 GTTGATCGGGTGGGATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTAT 11148 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | ||||| |||| ||||||||||| ||||| | |||||| ||||| || |||| Sbjct 11149 CAGAGCCTTCGACTTCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCA 11208 Query 95007 T 95007 | Sbjct 11209 T 11209 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || | || || || | ||||||||| ||||| | | Sbjct 10287 AAAATTTGCATACCACCTCTGAGTCTGAGGACTAAATGGAGAGTAGATTCTTTTTGGATG 10346 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| ||| || || ||| |||| || || || |||||||||| | || Sbjct 10347 TTGTAATCAG--ATAAAGTACGACCATCTTCCAATTGCTTACCAGCAAAGATTAAACGTT 10404 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| || ||||||||||||||||| | |||||| | || || | | |||| Sbjct 10405 GTTGATCGGGTGGAATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGT 10464 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||||| |||| || |||||||| ||||| | ||||| || || || |||| Sbjct 10465 CTGAACCTTCGACTTCAAGAGTAATGGTTTTACCAGTCAAGGTTTTGACGAAAATTTGCA 10524 Query 95007 T 95007 | Sbjct 10525 T 10525 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || | || || || | ||||||||| ||||| | | Sbjct 10515 AAAATTTGCATACCACCTCTGAGTCTGAGAACTAAATGGAGAGTAGATTCTTTTTGGATG 10574 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || ||| || || || || | ||||| ||| | || || | ||||| Sbjct 10575 TTGTAGTCAG--ATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTT 10632 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| || || |||||||||||||| | |||||| | ||| || | | ||| | Sbjct 10633 GTTGATCGGGTGGGATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTAT 10692 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| ||||||||||| ||||| | |||||| || || || |||| Sbjct 10693 CAGAGCCTTCAACTTCAAGGGTGATGGTTTTACCAGTTAAAGTTTTGACGAAAATTTGCA 10752 Query 95007 T 95007 | Sbjct 10753 T 10753 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || | || || || | ||||||||| ||||| | | Sbjct 10743 AAAATTTGCATACCACCTCTAAGTCTGAGGACTAAATGAAGAGTAGATTCTTTTTGGATG 10802 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || | ||| | ||| || | ||||| ||| |||| ||||| | ||| Sbjct 10803 TTGTAGTCAGATAAAGTTCTACCATCTTCTAATTGTTTACCGGCAAAAATTAAACGTTGT 10862 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || || |||||||||||||| | || || | ||| ||| | | ||||| Sbjct 10863 TGATCGGGTGGGATACCTTCTTTGTCTTGGATCTTGGTCTTAACGTTTTCAATGGTGTCT 10922 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || || || || ||||| | ||||| || || || ||||| Sbjct 10923 GAACCTTCGACTTCAAGAGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 94772 TTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTA 94831 ||||| ||| ||||| | || | || || || | ||| ||||||||||| | |||| Sbjct 10062 TTTTAGTTTCCACCTCTAAGTCTGAGGACTAAATGGAGAGTGGATTCCTTTTGAATGTTA 10121 Query 94832 TAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 || | | ||| || || || || | ||||| ||| | || || | |||||| | Sbjct 10122 TAGT--CAGATAAAGTACGACCGTCTTCTAATTGTTTACCGGCGAAAATGAGTCTTTGTT 10179 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 |||| || || |||||||| || || | ||| |||| ||| ||| | | || |||| Sbjct 10180 GATCGGGTGGGATACCTTCCTTATCTTGAATCTTTGTCTTAACGTTTTCAATGGTATCAG 10239 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || || || || ||||| | ||||| || || || ||||| Sbjct 10240 AGCCTTCGACTTCAAGGGTAATAGTCTTACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 >seq57 Length=71319 Score = 118 bits (130), Expect = 1e-21 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || | || || || | ||||||||||||||| | | Sbjct 43404 AAAATTTGCATACCACCTCTGAGTCTAAGAACTAAATGGAGAGTAGATTCCTTTTGGATG 43463 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || ||| || || |||||||| ||||| || |||||||||| | || Sbjct 43464 TTGTAGTCAG--ATAAAGTACGACCATCCTCCAATTGTTTACCAGCAAAGATTAAACGTT 43521 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | ||||| || || |||||||||||||| | |||||| | || || | | |||| Sbjct 43522 GTTGATCGGGTGGGATACCTTCTTTGTCTTGAATTTTAGTTTTAACATTTTCAATGGTGT 43581 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || |||| || |||||||| ||||| |||||||| ||||| || |||| Sbjct 43582 CTGAGCCTTCTACTTCAAGAGTAATGGTTTTACCAGTGAGAGTTTTAACAAAAATTTGCA 43641 Query 95007 T 95007 | Sbjct 43642 T 43642 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| | || | || || || | ||| ||||| ||||| | | Sbjct 43860 AAAATTTGCATACCACCTCTAAGTCTAAGAACTAAATGAAGAGTGGATTCTTTTTGGATG 43919 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| | ||| | ||| || | ||||| ||| | || ||||| | ||| Sbjct 43920 TTGTAATCAGATAAAGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATTAAACGTTGT 43979 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || ||||||||||||||||| | ||| || | ||||||| | | |||||| Sbjct 43980 TGATCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGTCTTGACGTTTTCAATAGTGTCT 44039 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| |||| || |||||||| ||||| | || || || || || ||||| Sbjct 44040 GAGCCTTCGACTTCAAGAGTAATGGTTTTACCAGTCAAGGTCTTGACGAAAATTTGCAT 44098 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTC 94868 |||||||||||||| | |||||| || ||| || || || || | ||||| | Sbjct 42990 GTAGATTCCTTTTGGATGTTATAGTCAG--ATAAAGTACGACCGTCTTCTAATTGTTTAC 43047 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | |||| ||||| | ||| ||||| || ||||||||||||||||| | ||| || | || Sbjct 43048 CAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCTTGAATCTTGGTCT 43107 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 ||||| ||| || |||| | ||||| |||| || |||||||| ||||| | | Sbjct 43108 TGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGTTTTACCAGTCAAGG 43167 Query 94989 TTTTCACAAAGATCTGCAT 95007 | || || || || ||||| Sbjct 43168 TCTTGACGAAAATTTGCAT 43186 >seq1179 Length=2421 Score = 113 bits (124), Expect = 4e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| |||| | || || || | ||| ||||| ||||| | Sbjct 2214 AAAAATTTGCATACCACCTCTTAATCTGAGAACTAAATGAAGAGTGGATTCTTTTTGAAT 2155 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || ||| | || |||| ||||| || |||||||||| | ||| Sbjct 2154 GTTGTAGTCAGACAAAGTTCTACCGTCTTCCAATTGTTTACCTGCAAAGATTAAACGTTG 2095 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| || || ||||||||||| || | |||||| | ||||||| | | || || Sbjct 2094 TTGATCGGGTGGGATACCTTCTTTATCTTGAATTTTAGTCTTGACGTTATCAATTGTATC 2035 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || |||| ||||||||||| ||||| | ||||| || || || ||||| Sbjct 2034 AGAGCCTTCAACTTCAAGGGTGATGGTTTTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | ||| ||||| ||||| | |||||| || ||| ||| | ||| | Sbjct 2411 ACCAAGTGAAGAGTGGATTCTTTTTGAATGTTATAGTCAG--ATAAGGTTCTACCATCTT 2354 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||||| || |||| || | |||||| ||||| || |||||||||||||| || | Sbjct 2353 CCAATTGTTTACCTGCAAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTATCTT 2294 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| | || || | | || || | || || |||| ||||| |||| Sbjct 2293 GAATTTTAGTTTTAACATTATCAATTGTATCGGAACCTTCAACTTCAAGGGTGATAGTTT 2234 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| | ||| || ||||| || ||||| Sbjct 2233 TACCAGTCAAAGTCTTGACAAAAATTTGCAT 2203 >seq778 Length=8042 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | || ||||| | || ||||| ||||| | ||| || || Sbjct 4692 CCACCTCTAAGTCTGAGAACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGAT 4751 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| || | ||||| ||| |||||||||| | ||| ||||| || || Sbjct 4752 AAAGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 4811 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||||||||| | || || ||||||||| ||| ||||||| ||||| Sbjct 4812 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACT 4871 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||||| || ||||| | ||||| || ||||| |||||| Sbjct 4872 TCGAGAGTGATGGTCTTACCAGTTAAGGTTTTAACGAAGATTTGCATG 4919 >seq298 Length=27992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/154 (73%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | || ||||| | |||||||| ||||| | ||| |||||| Sbjct 13175 CCACCTCTGAGTCTGAGGACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGG-- 13232 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| || || || || | ||||| || ||||||| | |||||| ||||| || | Sbjct 13233 ATAAAGTACGACCGTCTTCTAATTGTTTACCAGCAAAGATAAGTCTTTGTTGATCGGGGG 13292 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 | |||||||||||||| | ||||| |||||||| Sbjct 13293 GGATACCTTCTTTGTCTTGGATTTTAGCCTTGAC 13326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284318730080