Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq41 187 4e-42 seq37 165 1e-35 >seq41 Length=78064 Score = 187 bits (206), Expect = 4e-42 Identities = 374/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 || |||||||| | ||||| |||||||| || || || || ||||| ||| |||| || Sbjct 28658 GAAATCTATAACTTGGGTGCCCAAAGTCACGTCAAGGTCTCTTTTGACATGTCAGAATAC 28599 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 ||| | ||||| || | ||| || | || ||||| || || || | ||| | || Sbjct 28598 ACTGCCAATGTCGACGGTTTGGGTGCACTCAGAATCCTCGATGCCATCCGTTCATGAGGT 28539 Query 193767 ATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTA 193826 | || || | ||| | |||| || || || ||||| || || ||||| |||| | Sbjct 28538 CTCGAAAACAAGGTTAGATTCTACCAAGCCTCCACCAGTGAGCTCTATGGCAAGGTTCAA 28479 Query 193827 GGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAG 193886 | ||||| ||| || ||||| ||||| |||| || || || || | | | || || Sbjct 28478 GAGGTTCCACAATCCGAGACCACCCCATTCTATCCCCGTTCACCATACGCTCTTGCCAAA 28419 Query 193887 TTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCT 193946 | || || |||||| | || |||||||| | || | |||| | Sbjct 28418 CAATTTGCCTACTGGATCTTGGTCAACTATCGTGAAGCCTACAACATGTACGCCTGCAAC 28359 Query 193947 GGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATT 194006 ||||||||||| |||||||||||||||||||||||| || ||||| |||||||| || Sbjct 28358 GGTATTCTCTTTAATCACGAATCTCCAAGAAGAGGTCCCACTTTTGTCACTCGTAAAAT- 28300 Query 194007 ACACAAGGTT--TATCTAAGATCTCTGTTGGATTAC--AGAAGATTCTTTATCTTGGTAA 194062 ||| || || | | || || |||| | || ||||| | || ||||| || || Sbjct 28299 -CACTAGATTCGTGGCACGTATTGCTCTTGG-TCACAAAGAAG-TACTCTATCTCGGCAA 28243 Query 194063 TCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAAT 194122 | |||| | | |||||||| || || || || ||||| |||| |||||| | || Sbjct 28242 CATCTATGCCCAACGTGATTGGGGCCATGCCAAAGACTATGTCGAAGGAATGTGGCTCAT 28183 Query 194123 GTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAG 194182 ||| ||||| || |||| || |||||||| | || || |||||| || | || || Sbjct 28182 GTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGAAACACATCCGGTCAG 28123 Query 194183 AGACTTTGT 194191 ||| ||||| Sbjct 28122 AGAATTTGT 28114 >seq37 Length=80241 Score = 165 bits (182), Expect = 1e-35 Identities = 368/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Plus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTAT 193706 || || |||||| | || || |||||||| || || || || ||||| ||| ||||||| Sbjct 19324 GAAATATATAATTTGGGCGCCCAAAGTCACGTCAAGGTCTCTTTTGATATGTCAGAGTAC 19383 Query 193707 ACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGA 193766 || | ||||| || | ||| || | || ||||| || || || | ||| | || Sbjct 19384 ACCGCCAATGTCGACGGTTTGGGTGCACTCAGAATCCTCGATGCCATCCGTTCATGCGGC 19443 Query 193767 ATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTA 193826 | || || | || | |||| || || || ||||| || || ||||| || | | Sbjct 19444 CTCGAAAACAAGGTCAGATTCTACCAAGCCTCCACCAGTGAGCTCTATGGCAAAGTACAA 19503 Query 193827 GGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAG 193886 | ||||| || || ||||| ||||| |||| || || || || | || || ||| Sbjct 19504 GAGGTTCCACAGTCTGAGACCACCCCATTCTATCCCCGTTCACCATACGCCGTCGCCAAG 19563 Query 193887 TTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCT 193946 | || || |||||| | || |||||||| | || | |||| | Sbjct 19564 CAATTTGCCTACTGGATCTTGGTCAACTATCGTGAAGCCTACAACATGTACGCCTGCAAC 19623 Query 193947 GGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATT 194006 ||||||||||| |||||||| |||||||||||||| || ||||| |||||||| || Sbjct 19624 GGTATTCTCTTTAATCACGAGTCTCCAAGAAGAGGCCCCACTTTTGTCACTCGTAAAAT- 19682 Query 194007 ACACAAGGTT--TATCTAAGATCTCTGTTGG-ATTACAGAAGATTCTTTATCTTGGTAAT 194063 ||| || || | | || || |||| | ||||| | || ||||| || || Sbjct 19683 -CACCAGATTCGTGGCACGTATTGCTCTTGGCCACAAAGAAG-TCCTCTATCTCGGCAAC 19740 Query 194064 CTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATG 194123 | ||||| | | |||||||| || || || |||||||| || | |||||| | ||| Sbjct 19741 ATCAATGCCCAACGTGATTGGGGTCATGCCAAAGATTATGTCGAGGGTATGTGGCTCATG 19800 Query 194124 TTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGA 194183 || ||||| || |||| || |||||||| | || || |||||| || | || ||| Sbjct 19801 TTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGTGAAACTCATCCAGTCAGA 19860 Query 194184 GACTTTGT 194191 || ||||| Sbjct 19861 GAGTTTGT 19868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807542804027680