Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq697 210 2e-49 >seq697 Length=10231 Score = 210 bits (232), Expect = 2e-49 Identities = 413/605 (68%), Gaps = 20/605 (3%) Strand=Plus/Minus Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 ||| |||||| ||||| | || || | ||| || || | ||| || | || ||||| | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 21528 ATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA---TGCTC 21584 |||| ||||||||||| || || | || || | |||||| || || ||||| ||| Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 21585 CTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATT 21644 ||||||| | || ||||| ||||| ||||| |||||||| ||||| | ||| ||| Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATG---ATT 5780 Query 21645 CTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTAT 21704 | | |||||| | |||||| | ||||| | ||| | ||| || || | Sbjct 5779 TGCTGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCT 5720 Query 21705 CAATAGCTTTTAAAAGAT-GAtttttttCAT-CTACATCGGTTATGNNNNNNNNNNNNNN 21762 | || || || || || | | | |||| || || | || ||| Sbjct 5719 CGATGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGG--ATGTAGGTGTCGATCAA 5662 Query 21763 NNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCT 21822 ||| || | || ||||| || ||||| || || || || || || || |||||||| Sbjct 5661 GAGACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCT 5602 Query 21823 TGCCTCTGAACATTGAACCTCGGA-ATAAAATCGTTGAGCCAAG-TTTTCATTTACTATT 21880 ||||||| | |||||| || ||||| | ||| | |||| |||||||| || || Sbjct 5601 AGCCTCTGGAATTTGAACTTCACTCATAAACT--TTGTGGCAAGATTTTCATTGACAATA 5544 Query 21881 CCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTT 21940 ||||||||||| || ||||| ||||| | ||| ||| ||||| ||||||||||| || Sbjct 5543 CCATCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTT 5484 Query 21941 AAT---TTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAG 21997 ||| || |||||||| | |||| || ||||| | |||||| | ||||||||| Sbjct 5483 AATTTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAA 5424 Query 21998 CTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACA 22057 || || ||| | ||| ||||| |||| |||||||| | | | ||||| |||| ||| Sbjct 5423 CTGGCTTCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACA 5364 Query 22058 AACCT 22062 || || Sbjct 5363 AATCT 5359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531892635322720