Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq697 273 3e-68 seq2 181 1e-40 >seq697 Length=10231 Score = 273 bits (302), Expect = 3e-68 Identities = 425/601 (71%), Gaps = 11/601 (2%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| |||||| || || | |||||| ||||||||||| | ||| || || ||||| || | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAA---TGATC 33412 | || | |||||||| | ||||| || || |||||||| || || || || || Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33472 | ||||| |||| || || || || |||||||||| | | || || | || Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 33473 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 ||| ||||| | ||||| |||||||||||||| ||||| || || || || | Sbjct 5776 TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGA 5717 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 |||| || || || | | | ||||| || |||| | || || |||||||| |||| Sbjct 5716 TGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGAC 5657 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 | || | || ||||| |||||||||||||| || || || || |||||||||||||||| Sbjct 5656 TGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCT 5597 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAA-ATTTTCATTCACTATTCCGTCA 33711 | | ||| || ||||| | || || | || | ||| ||||||||| || || || ||| Sbjct 5596 CTGGAATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT--- 33768 ||||| || ||||| ||||| |||| ||| ||||| ||||| ||| | Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 33769 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 || |||||||| |||| |||| | | ||| | |||||| |||||||||| || Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 33829 TCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTA 33888 || || | ||| ||||| ||||| || |||| | || ||||||||| | ||||||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 33889 T 33889 | Sbjct 5357 T 5357 >seq2 Length=160969 Score = 181 bits (200), Expect = 1e-40 Identities = 571/878 (65%), Gaps = 15/878 (2%) Strand=Plus/Minus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 ||| |||| ||| |||| ||| |||||||| || || | | | ||||| | || Sbjct 39122 CAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGAT 39063 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 || |||||||| || || | || || || | ||||||||||| ||| || Sbjct 39062 TTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATT 39003 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 || ||||| || || || |||||||| ||||||||||| || || | ||| | ||| || Sbjct 39002 GCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGC 38943 Query 63068 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGT----ATCTCCTTTCTCTTTCGTATA 63123 ||||| | || | || || || | | ||| |||| | | ||| ||||| Sbjct 38942 AAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCTT-CGTATT 38884 Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 | ||| | | | ||||| || | | | |||| ||||| ||| | | Sbjct 38883 GGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGCTTCGTTGG 38824 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 |||| | | ||||| || ||| | || |||| || ||||||||| ||| | || Sbjct 38823 GACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGACCC 38764 Query 63244 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63303 | || || ||| || ||||||| ||| |||||| || || |||||||| | || Sbjct 38763 AGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAAT 38704 Query 63304 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63363 ||| ||| | | |||||| | ||||| || |||||||| | ||| | | || | Sbjct 38703 CGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTC 38644 Query 63364 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63423 ||| || || || || | |||||| || |||| |||| | || | | ||| || | Sbjct 38643 TCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGA 38584 Query 63424 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTAC 63483 ||||||||| ||| | || ||||| || |||||| || | ||||| | || || Sbjct 38583 CAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGT 38524 Query 63484 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63543 | | | ||| || || || || |||| ||| | || || |||| | |||| Sbjct 38523 GACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGT 38464 Query 63544 CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG-G 63602 |||||||||| ||||| || || |||| | | || ||||| || ||||| || | Sbjct 38463 CATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGAG 38404 Query 63603 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63662 | | | || |||| ||||| | ||| || | ||||| ||||| |||| Sbjct 38403 GGTTGGGT-GTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCTTTTGGCTG 38345 Query 63663 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 63718 || |||| ||| ||||| | ||| | ||| | ||| || | |||| || || | Sbjct 38344 AGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGC---CCAAC-GA 38289 Query 63719 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63756 |||||||||||||||||| || || | |||| ||||| Sbjct 38288 GACACGCATTAACATGTGTTGGGGACGCTCAATGATCT 38251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 318/486 (65%), Gaps = 15/486 (3%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| |||| | | || ||| | ||||| ||||||||||| || || || ||| Sbjct 40045 GTGAATTGGATGGCGTCTGCAGCTGGTCTGGTACGGAGATAGTACATACCGGTCTTGAGA 39986 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||| |||||| ||||| || ||||||||| | | || || || ||| Sbjct 39985 CCCTTTTTCCAGGAGTAAAAGTGCATCGATGTGAGTTTGGAAAAGGTGGGCTCAGCAATA 39926 Query 62115 TGGATATTCATAGAT-TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 62173 || ||| | || | || ||||| || || ||||| || | || || ||||| | || Sbjct 39925 AAGACATTGA-AGCTCTGGCTTTGGTCAATAAAGGCACCACGCTCGGCGGCCATGTCAAT 39867 Query 62174 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62232 || || |||| |||||||||| | ||||| || | ||| || | ||| || || | Sbjct 39866 GAGGGTTCTTTGACGAATTTCCCAGACTGTTTTGTAGAGCTC-TTTGAGATCGTCGGGGA 39808 Query 62233 GGT-TTGTAT-TCTGAATGGATCCACCATCTG----CCATAATCCTATTCTTGATCTCAT 62286 | | || ||| ||||| | | |||| || || ||||||||||| Sbjct 39807 TTTCCTCAATATCT---TGGATACTGCCTCTGTGGAGAATGATTTGGTTCTTGATCTCTG 39751 Query 62287 CATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATT 62346 ||||| ||| | | | | | ||||| || ||| || | |||| Sbjct 39750 GCGACCATAGACCAAGCTCCATGAGATCGGTGAGGAGTTGTTTATTTACAATGGTGAATT 39691 Query 62347 CTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTAT 62406 | || | ||| || | ||| ||||||| || || || || || | ||||||| | Sbjct 39690 CACCGGCCAACACACGACGACTGTAAATGTTGGATGTGTATGGCTCAAAGCACTCATTGT 39631 Query 62407 TTCCCAAAATTTGAGCAGTTGAT-GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62465 |||| | |||||||| || || | || || ||||| || || | ||| | ||| |||||| Sbjct 39630 TTCCGAGAATTTGAG-AGGTGCTGGCGGTTGGCATTGGGGCAATCAAAAGACTGTTTCTA 39572 Query 62466 AGACCG 62471 |||||| Sbjct 39571 AGACCG 39566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937637760480