Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 178 3e-39 seq697 105 2e-17 >seq2 Length=160969 Score = 178 bits (196), Expect = 3e-39 Identities = 1124/1784 (63%), Gaps = 84/1784 (5%) Strand=Plus/Plus Query 363431 TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCC 363490 ||||||| | || |||| || || || || |||||||||||||| | | || |||| Sbjct 38242 TCAATGGCCAGATCATTGAGCGTCCCCAACACATGTTAATGCGTGTCTCGTTGGGCATCC 38301 Query 363491 ATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCA 363550 | || ||| | || ||||| | || || || | || || || | || | Sbjct 38302 ACGGCGACGATTTGGACGCCGCTCTCGAGACCTACGATCTCCTCAGCCAAAAGCTCTTTA 38361 Query 363551 CGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCT 363610 | |||||||| || || | | || | || || | || || |||||||| ||| | Sbjct 38362 CCCACGCCACCCCCACCCTCTTTAACTCGGGTACACCCAACCCTCAGATGTCAAGTTGTT 38421 Query 363611 TTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTG 363670 | || | |||||||||| || || || || ||||||| |||||| || || | |||| Sbjct 38422 TCCTCGTGCAAATGAAGGAAGACTCGATAGACGGTATCTATGACACTCTCAAACAGTGTG 38481 Query 363671 CTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGA 363730 | || || || ||| || || |||||| | | ||||| | | || ||| Sbjct 38482 CCCTCATCAGTAAATCTGCCGGTGGCATTGGTATCGCCTGTCACAAGATCAGAGC-CAGC 38540 Query 363731 A-CAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 | |||||| || || ||||| | || | | || || || | || |||||||||||||| Sbjct 38541 AGCAGTTATATCCGTGGCACCAACGGCACA-TCCAACGGTATTGTCCCCATGCTTCGTGT 38599 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 ||| | | ||||| || ||||||||||| || || || ||| | || || || ||||| Sbjct 38600 CTTTAATGACACTGCCAGATACGTCGACCAAGGCGGTGGCAAGAGAAAGGGTGCCTTTGC 38659 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA--- 363905 | || | ||||| || |||||||||||||||||| | || | |||||| Sbjct 38660 CGTCTACTTGGAGCCATGGCACGCCGATATTTTTGAGTTTATCGATTT---GAAAAAGAA 38716 Query 363906 -CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 ||| || ||||||||| || | || | || || || || || || ||||| ||||| Sbjct 38717 CCAC-GGCAAAGAGGAAATGAGAGCCAGAGACCTCTTTTACGCCCTCTGGGTCAGTGACC 38775 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTC 364024 |||||| | | || ||| | ||||||| |||||||| || ||||| | Sbjct 38776 TCTTTATGGAAAGAGTCGAGCAAAACGCCGATTGGTCCCTCTTTTGTCCCAACGAAGCCC 38835 Query 364025 CAGGTCTTTCCGA-TG-TATGGGGTGACGACTATGTTGCTCTAT-ACGAAAAGTATG--- 364078 | || | |||| || || | | | || |||||| | || | | | Sbjct 38836 CTGGCTTGGCCGAGTGCCATAGCGAAGAGTTTAGAAAACTCTATCTCCAATACGAAGCCA 38895 Query 364079 AATCGGA---GGGAAAGGCTCGTAAGA-CAATTCCCGCACAGAAGCTATGGTTTGCCATC 364134 | | || | ||| ||| || ||| || || | || ||||||||||| Sbjct 38896 CACCAGATCTTGCCAAG---CGTGTGATCAA----AGCCCAAGACCTCTGGTTTGCCATT 38948 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 | || | || || || || || || || | || | ||||||||| | ||||| Sbjct 38949 CTCGAAGCCCAAATCGAAACTGGTACCCCATTCATCCTCTACAAAGATGCCTGCAATTCA 39008 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATT--CAGCAGAGCAACCTATGTACCGAGATTA 364252 || ||||| || || ||||||| || ||| |||| |||||||| || || || || Sbjct 39009 AAATCCAATCAACAAAACCTTGGCACCATTTCCAGC--AGCAACCTTTGCACAGAAATCG 39066 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGG 364312 | |||||||| | || || || ||||| || || | || || || || | || Sbjct 39067 TCCAATACACCTCGCCAGAGGAAGTGGCCGTTTGCAATTTGGCCTCTATTGCTTTGCCCA 39126 Query 364313 CGTTTGT------AAAAGATGGTAC---------------------TTTTGACCACCAGC 364345 | ||| |||| | ||| | | |||||| || | Sbjct 39127 AATATGTTGTCCAAAAACAAGGTTCCACCAACCCCAAAGAAAAGGAATATGACCATCAAC 39186 Query 364346 ATCTTTATGACGTAACCTA--TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAA 364403 |||| ||||| |||||| | | || || |||||| ||||| | || |||| || Sbjct 39187 ATCTCTATGAGGTAACCAAGGTAAT--CACCAAGAATCTCAACAAGATCATTGACAGAAA 39244 Query 364404 TTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGG 364463 || |||||| | || ||| | || || || ||| | || | || ||||||||||| Sbjct 39245 CTACTATCCAGTGCCCGAATCAAAGGTGTCCAACATGAGACACAGACCCATTGGTCTTGG 39304 Query 364464 TGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGC 364523 | || || ||||| || || ||||| || | | ||||| || ||| ||| Sbjct 39305 CATCCAAGGTCTCGCCGATGTCTTTATCGCCCTTCGTTTACCTTTTGACTCTACTGGCGC 39364 Query 364524 TCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTG 364583 | || ||| ||||| ||||| || ||||||||||| | || || || Sbjct 39365 TGCCACACTCAATCGTGAGATTGCCGAAACCATCTATTTTGCCGCTCTCACAGCCTCTAA 39424 Query 364584 TGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGG 364643 ||| ||||| || | || || || | ||| || || || || |||| Sbjct 39425 TGAGTTGGCTGCTGCCCACGGTGCCTATGAAACCTTTGAAGGCTCACCAGCCTCTAAGGG 39484 Query 364644 AAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCT 364703 | |||| | ||| | ||| |||||| |||||| || ||| |||||| | || Sbjct 39485 TATCCTCCAATATGACATGTGGGGTGTCACTCCATCTCCACGTTGGGACTGGGCCAAACT 39544 Query 364704 ACGTTCCAACGTTAAG---AAG--CA-TGGTACTCGCAACTCCCTCGTTACAGCGCCCAT 364757 ||| | ||| ||| || ||| | | ||| || | | || || || Sbjct 39545 ------CAAGGAAAAGATCAAGGCCACCGGTCTTAGAAACAGTCTTTTGATTGCCCCAAT 39598 Query 364758 GCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAG 364817 ||| || || || | || || ||||||||||| |||||||| || || | ||| Sbjct 39599 GCCAACCGCCAGCACCTCTCAAATTCTCGGAAACAATGAGTGCTTTGAGCCATACACATC 39658 Query 364818 CAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGT 364877 ||| |||| || || || | |||| ||||| | | || ||||| | || | Sbjct 39659 CAACATTTACAGTCGTCGTGTGTTGGCCGGTGAATTCACCATTGTAAATAAACAACTCCT 39718 Query 364878 CAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAG-CATGAAGAACTATATCA-TCGCC 364935 || ||||| || | || || | || | ||| || |||||| | |||| || || Sbjct 39719 CACCGATCTCATGGAGCTTGGTCTAT-GGTCGCCAGAGATCAAGAACCAAATCATTCTCC 39777 Query 364936 GCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAA 364995 | | || | | || | ||| | | | || || ||||| || | |||||| Sbjct 39778 AC-AGAGGCAGTATCCAAGATATTGAGGAAATCCCCGACGATCTCAAAGAGCTCTACAAA 39836 Query 364996 ACCGTATGGGAAATT--TCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTT 365053 || || ||||||||| || | |||| |||||||| ||||| ||||| || ||||| | Sbjct 39837 ACAGTCTGGGAAATTCGTCAA--AGAACCCTCATTGACATGGCCGCCGAGCGTGGTGCCT 39894 Query 365054 TTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTA 365113 |||| || |||||| || || || || || || |||| |||| |||| || | Sbjct 39895 TTATTGACCAAAGCCAGAGCTTCAATGTCTTTATTGCTGAGCCCACCTTTTCCAAACTCA 39954 Query 365114 CATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 |||| ||||| || ||| |||||| ||||| ||||| ||| Sbjct 39955 CATCGATGCACTTTTACTCCTGGAAAAAGGGTCTCAAGACCGGT 39998 >seq697 Length=10231 Score = 105 bits (116), Expect = 2e-17 Identities = 399/611 (65%), Gaps = 19/611 (3%) Strand=Plus/Plus Query 22048 GAGAATAAAGATCGTTTCGTACTATTTCCGATTGTACACGAAGATATTTATGAAGAA-TA 22106 |||||||||||| | || || |||| || || |||| | ||||| | ||||| || Sbjct 5347 GAGAATAAAGATAGATTTGTGTTATTCCCAATCAAACACAATGATATATG-GAAGATGTA 5405 Query 22107 CAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATTTCCACTGATAAGAC 22166 ||| |||| ||||| | ||| | ||||||||| | | | ||| | Sbjct 5406 CAAACAAGCTGAAGCCAGTTTTTGGACAGCCGAAGAAATTGATTTGGCACCAGATCTCAA 5465 Query 22167 GGATTGGC-CAA-AACTTACA-GAAAACGAACAACATTT--TATCAAATATATTCTAGCA 22221 |||||| ||| || ||| | || ||||||| |||| |||| ||| | || || Sbjct 5466 CGATTGGAACAAGAAATTAAATGATAACGAACGTTATTTCATATCCAATGTTTTG--GCC 5523 Query 22222 TTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAA 22281 || || ||| || || ||||| || ||| ||||| | || || ||| |||| Sbjct 5524 TTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCTTGCCACAAAGTTTATGAGTGAA 5583 Query 22282 ATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCAC 22341 ||||| |||||||| |||||||||||||| | ||||| |||||||| | || Sbjct 5584 GTTCAAATTCCAGAGGCTAGATGTTTCTATGGCTTCCAAATTGCCATTGAAAACATCCAT 5643 Query 22342 GCGGAAACATAT--TCTAT-GATGCTACAGTCACTCGTAGAAGATAAAGACGAACAACGA 22398 | || || || ||| | ||| | ||| || | |||| | | ||| | | Sbjct 5644 TCAGAGACCTACAGTCTCTTGAT-CGACACCTACA--TCCAAGACAGCGTGGAAAAGAGC 5700 Query 22399 AACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTG 22458 || ||||| ||| || ||||| | | | || || ||||| || ||||| || Sbjct 5701 AAACTATTCAACGCCATCGAGACCATCCCCTGTGTGAAAAAGAAGGCCGACTGGGCATTG 5760 Query 22459 AAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAA 22518 | |||||| | ||| ||||| || |||||| | |||| ||||| | || || Sbjct 5761 AGATGGATCACCAACAGCAAATCATTTGCCGAACGTTTAGTTGCCTTTGCCGCCGTCGAG 5820 Query 22519 GGCATTTTCTTTTCTGGAGCATTTTGTGCA--ATCTTTTGGCTaaaaaaaCGTGCAATTA 22576 || || || |||| | ||| ||| ||| ||||||||||| || ||||||| | | Sbjct 5821 GGTATCTT--TTTCAGCGGCAGTTTTTGCTCTATCTTTTGGCTCAAGAAACGTGGTTTGA 5878 Query 22577 TGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATT 22636 |||| ||| | || || || || ||| | || || || || |||||||| || | | | Sbjct 5879 TGCCCGGTTTGACATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTCTCCACTGCAACT 5938 Query 22637 TTGCGTGTATG 22647 |||| ||| || Sbjct 5939 TTGCCTGTTTG 5949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303333093360296