Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1179 114 1e-20 seq79 111 1e-19 seq57 111 1e-19 >seq1179 Length=2421 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||||||||| || | || || ||||| || ||| | ||| || || | Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTC- 2261 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||| || ||| | || ||| |||||| ||||||||||| | || |||| Sbjct 2262 -CGATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATC 2320 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||||| ||| || |||||||| ||||||| | |||| | | || |||| Sbjct 2321 AACAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATA 2380 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||||||||| || ||| | || |||| Sbjct 2381 ACATTCAAAAAGAATCCACTCTTCACTTGGT 2411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| | || || |||||||| ||| | ||| || | Sbjct 1974 AATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTC 2033 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || || |||||| ||||||||||| |||| ||||| Sbjct 2034 TGATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCA 2093 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | ||| || |||||||| ||||| | | ||| || | || || || Sbjct 2094 ACAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAA 2153 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||| || ||| | ||| | || | ||||| |||| || Sbjct 2154 CATTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATTAAGAGGTGG 2201 >seq79 Length=61457 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 115279 ATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA 115338 ||| | ||||||||||||||| ||||| | || || |||||||| ||| | ||| || Sbjct 11216 ATTTATAATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGA 11157 Query 115339 GTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGT 115398 | || ||| ||| | | ||||| |||||| || |||||||| |||| Sbjct 11156 AGGCTCTGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACC 11097 Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 ||||| ||| | | || | ||| || |||||||||||||||| | |||| | | || Sbjct 11096 CGATCAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGA 11037 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| |||||||| || ||| | ||| |||| | ||||| |||| || Sbjct 11036 CTACAACATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGG 10983 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| | || || |||||||| ||| | ||| || | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | | ||||| |||||| || |||||||| |||| ||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| || || |||||||||||||| | || | | || || ||| Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || |||||||| |||||| | ||| | || | ||| | |||| || Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGTTCTCAGACTCAGAGGTGG 10527 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| | || || || || |||||| | ||| || | Sbjct 10297 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCT 10238 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || || ||| ||| ||||| ||||| |||| ||||| Sbjct 10237 GATACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 10178 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| || || |||||||||||||| | || | | || |||||| Sbjct 10177 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 10118 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 |||||||| || || ||| | ||| | || | ||| | |||| ||||| Sbjct 10117 ATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGACTTAGAGGTGGAAA 10068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||| |||||||| | || || ||||||||||| | ||| || || || Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| | | || ||| |||||| || |||||||| | || |||| Sbjct 10465 --GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATC 10408 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | | || | ||| || || ||||| ||||||| || | | ||||| | Sbjct 10407 AACAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACA 10348 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| |||||||| |||||| | ||| | || | ||| | |||| || Sbjct 10347 ACATCCAAAAAGAATCTACTCTCCATTTAGTCCTCAGACTCAGAGGTGG 10299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||| |||||||| | || || || || ||||| | ||| || || || Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | |||| ||| | | || || || || || |||||||| |||| |||| Sbjct 10921 G--ACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATC 10864 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | | |||| ||| || |||||||||||||||| | ||| | | || || | Sbjct 10863 AACAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACA 10804 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| |||||||| |||||| | ||| | || | ||| | |||| || Sbjct 10803 ACATCCAAAAAGAATCTACTCTTCATTTAGTCCTCAGACTTAGAGGTGG 10755 >seq57 Length=71319 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||||||||| ||||| ||||| || |||||||||||| | ||| || || | Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | | || | | | | || || || ||| ||||| ||||| |||| |||| Sbjct 44266 G--ATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATC 44209 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||||| ||| || |||||||||||||||| | ||| | | || || | Sbjct 44208 AACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACA 44149 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 | ||||||||||| || ||| | ||| | || | ||| | |||| || Sbjct 44148 ATATTCAAAAAGAATCCACTCTTCATTTAGTCCTCAGACTCAGAGGTGG 44100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAGTC-CA 115343 ||||||||||| ||||| || | || || ||||||||||| | ||| || || | || Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| ||| | | || || || ||| || |||||||| | || |||| Sbjct 44038 G--ACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATC 43981 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | | |||| || || |||||||||||||||| | ||| | | ||||| | Sbjct 43980 AACAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACA 43921 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| |||||||| || ||| | ||| | || | ||| | |||| || Sbjct 43920 ACATCCAAAAAGAATCCACTCTTCATTTAGTTCTTAGACTTAGAGGTGG 43872 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| || ||||||||||| | ||| || | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| |||||| || |||||||| |||| ||||| Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 43523 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||||| || |||| || | | || || ||| Sbjct 43522 CAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAAC 43463 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || |||||| | ||| | || | ||| | |||| || Sbjct 43462 ATCCAAAAGGAATCTACTCTCCATTTAGTTCTTAGACTCAGAGGTGG 43416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425337634195360