Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1179 95.1 1e-14 seq79 86.0 6e-12 seq57 86.0 6e-12 >seq1179 Length=2421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | || || || |||||||||||||| || || || | ||| Sbjct 2186 AGAACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCT 2127 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | || || ||||| |||||||||| || || || || ||||| |||||||| || Sbjct 2126 TCCAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATCT 2067 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||||| ||||| | || | ||||| | | || | || | ||| | |||| Sbjct 2066 TGAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGTT 2007 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| |||| ||||| |||||||| ||||| Sbjct 2006 TTACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 >seq79 Length=61457 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || ||||| | || || || ||||| |||||||| || | ||| | || Sbjct 10998 AGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCT 11057 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| || || || || |||||||||| || || || || ||||| ||||||||||| Sbjct 11058 TCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCT 11117 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||||| ||| | | || | |||||| | | |||| || | ||| | |||| Sbjct 11118 TGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGTT 11177 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || |||| |||||| || ||||| ||||| Sbjct 11178 TTGCCAGTTAAAGTTTTAACAAAAATTTGCAT 11209 >seq57 Length=71319 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | ||| || |||||||| ||||| || || | || || ||| Sbjct 42975 AGAACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCT 43034 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 |||| || || || || | |||||||| || || || || || || ||||||||||| Sbjct 43035 TCTAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTCT 43094 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 || || ||||| | || | ||||| | | |||| || | ||||| |||| Sbjct 43095 TGAATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGTT 43154 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| || | || || |||||||| ||||| Sbjct 43155 TTACCAGTCAAGGTCTTGACGAAAATTTGCAT 43186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || |||||||| | || || |||||||| |||||||| || | || || ||| Sbjct 43431 AGAACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCC 43490 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | || || || || |||||||||| || || || || ||||| ||||||||||| Sbjct 43491 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC- 43549 Query 131143 GTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 ||| ||| | || | | | || | || || | | || | || | |||| ||| Sbjct 43550 TTGAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGT 43609 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||||| || |||||||| || ||||| ||||| Sbjct 43610 TTTACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005554603520