Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq79 87.8 1e-12 >seq79 Length=61457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || || || |||| ||| || ||||| || ||||| ||||||||||| | Sbjct 10983 CCACCTCTTAATCTAAGGACCAAATGAAGAGTGGATTCTTTTTGGATGTTGTAGTCAGAT 11042 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || |||||||| || ||| | || | || ||||| || || Sbjct 11043 AAGGTTCTACCATCTTCTAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGG 11102 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || |||||||| ||||| ||| || | | | ||| || | || | Sbjct 11103 ATACCTTCTTTGTCTTGAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCGACT 11162 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||||||||| || || | ||||| |||||||| |||||| Sbjct 11163 TCAAGGGTGATGGTTTTGCCAGTTAAAGTTTTAACAAAAATTTGCATT 11210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405081937351720