Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq697 255 7e-63 seq2 181 1e-40 >seq697 Length=10231 Score = 255 bits (282), Expect = 7e-63 Identities = 421/601 (70%), Gaps = 11/601 (2%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| |||||| || || | |||||| ||||||||||| | ||| || | ||||| || | Sbjct 5953 ACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGAGA 5894 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA---TGATC 32769 | || | |||||||| | ||||| || || |||||||| || || ||||| || Sbjct 5893 ATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGA-GCAAAAACTGCCG 5835 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 32829 | ||||| | || || || || || |||||||||| | | || || | || Sbjct 5834 CTGAAAA--AGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC 5777 Query 32830 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 ||| ||||| | ||||| |||||||||||||| ||||| || || ||||| | Sbjct 5776 TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTCTCGA 5717 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || || || || | | | ||||| || |||| | || || || ||||| |||| Sbjct 5716 TGGCGTTGAATAGTTTGCTCTTTTCCACGCTGTCTTGGATGTAGGTGTCGATCAAGAGAC 5657 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 | || | || ||||| |||||||||||||| ||||| || || ||||| |||||||||| Sbjct 5656 TGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCTAGCCT 5597 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCA 33068 | | ||| || ||||| | || || | || | || | ||||||||| || || || ||| Sbjct 5596 CTGGAATTTGAACTTCACT-CATAAACTTTGTGGCAAGATTTTCATTGACAATACCATCA 5538 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT--- 33125 ||||| || ||||| ||||| |||| ||| ||||| ||||| ||| | Sbjct 5537 CTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCATTTAATTTC 5478 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 || |||||||| |||| |||| | | ||| | |||||| |||||||||| || Sbjct 5477 TTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAAACTGGCT 5418 Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 33245 || || | ||| ||||| ||||| || |||| | || ||||| || | ||||||||| Sbjct 5417 TCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACACAAATCTA 5358 Query 33246 T 33246 | Sbjct 5357 T 5357 >seq2 Length=160969 Score = 181 bits (200), Expect = 1e-40 Identities = 571/878 (65%), Gaps = 15/878 (2%) Strand=Plus/Minus Query 62743 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62802 ||| |||| ||| |||| ||| |||||||| || || | | | ||||| | || Sbjct 39122 CAAAGCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGGTGTATTGGACGAT 39063 Query 62803 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 62862 || |||||||| || || | ||||| || | ||||||||||| ||| || Sbjct 39062 TTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATT 39003 Query 62863 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 62922 || ||||| || || || |||||||| ||||||||||| || || | ||| | ||| || Sbjct 39002 GCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGC 38943 Query 62923 TTTCCAGACGACTCGAGCCTTTATTATAGATTTGT----ATCTCTTTTCTCTTTCGTATA 62978 ||||| | || | || || || | | ||| |||| | | ||| ||||| Sbjct 38942 AAACCAGAGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCTT-CGTATT 38884 Query 62979 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCG 63038 | ||| | | | ||||| || | | | ||| ||||| ||| | | Sbjct 38883 GGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGCTTCGTTGG 38824 Query 63039 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63098 |||| | | ||||| || ||| | || |||| || ||||||||| ||| | || Sbjct 38823 GACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGAGGTCACTGACCC 38764 Query 63099 AAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63158 | || || ||| || ||||||| ||| |||||| || || |||||||| | || Sbjct 38763 AGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAAT 38704 Query 63159 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63218 ||| ||| | | |||||| | ||||| || |||||||| | ||| | | || | Sbjct 38703 CGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTC 38644 Query 63219 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63278 ||| || || || || | |||||| || |||| |||| | || | | ||| || | Sbjct 38643 TCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCATGGGGA 38584 Query 63279 TAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTAC 63338 |||||| |||||||| || ||||| || |||||| || | ||||| | || || Sbjct 38583 CAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGATCTTGT 38524 Query 63339 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 63398 | | | ||| || || || || |||| ||| | || || |||| | || | Sbjct 38523 GACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGT 38464 Query 63399 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-G 63457 ||||||| || ||||| || ||| |||| | | || ||||| || ||||| || | Sbjct 38463 CATAGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACTTGACATCTGAG 38404 Query 63458 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAA 63517 | | | || |||| ||||| | ||| || | ||||| ||||| |||| Sbjct 38403 GGTTGGGT-GTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAAGAGCTTTTGGCTG 38345 Query 63518 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGC 63573 || |||| ||| ||||| | ||| | ||| | ||| || | |||| || || | Sbjct 38344 AGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGATGC---CCAAC-GA 38289 Query 63574 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCT 63611 |||||||||||||||||| || || | |||| ||||| Sbjct 38288 GACACGCATTAACATGTGTTGGGGACGCTCAATGATCT 38251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622273748800