Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq697 250 3e-61 >seq697 Length=10231 Score = 250 bits (276), Expect = 3e-61 Identities = 441/634 (70%), Gaps = 18/634 (3%) Strand=Plus/Minus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| || || ||||||| | || | ||| ||||| || || | ||| || Sbjct 5955 GTACAACAAACAGGCAAAGTTGCAGTGGAGACCCTCGTCACGACTGATGAGCTCGTTAGA 5896 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 |||||| ||||| || | || || ||||||||||||||||| || || |||||| || Sbjct 5895 GAATGTCAAACCGGGCATCAAACCACGTTTCTTGAGCCAAAAGATAGAGCAAAAACTGCC 5836 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCG 93259 ||||| ||||| || ||||| ||||| || || | |||||||||||| |||||| Sbjct 5835 GCTGAAAAAGATACCCTCGACGGCGGCAAAGGCAACTAAACGTTCGGCAAATGATTTGC- 5777 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 | || |||||||| | || ||||| ||||| || || || | ||| || | || Sbjct 5776 ----TGTTGGTGATCCATCTCAATGCCCAGTCGGCCTTCTTTTTCACACAGGGGATGGTC 5721 Query 93320 TCGATAGCGTTAAATAG-GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||||| ||||| ||||| | ||| || | ||| | ||||| || ||||| || Sbjct 5720 TCGATGGCGTTGAATAGTTTGCTCT-TTTCCACGCTGTCTTGGATGTAGGTGTCGATCAA 5662 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 ||| || | || ||||||| || || || ||||||||||| || ||||||||||| Sbjct 5661 GAGACTGTAGGTCTCTGAATGGATGTTTTCAATGGCAATTTGGAAGCCATAGAAACATCT 5602 Query 93439 AGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||| || | || || ||||| | | ||| | | | | |||||||||||||| |||| Sbjct 5601 AGCCTCTGGAATTTGAACTTCACTCATAAACTTTGT-GGCAAGATTTTCATTGACAATAC 5543 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT---GTTTCTCATCATCTT 93554 |||| || || ||||| ||||| | || ||| |||| ||| | |||| || Sbjct 5542 CATCACTGGCAGCGAAAAAGGCCAAAACATTGGATATGAAATAACGTTCGTTATCA--TT 5485 Query 93555 TAA--GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAA 93612 ||| ||| | ||||||| |||||| || | ||| | ||||||| | |||||||| Sbjct 5484 TAATTTCTTGTTCCAATCGTTGAGATCTGGTGCCAAATCAATTTCTTCGGCTGTCCAAAA 5425 Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 ||||| |||| ||||||||| | |||||| || | | || ||||| |||| || Sbjct 5424 ACTGGCTTCAGCTTGTTTGTACATCTTCCATATATCATTGTGTTTGATTGGGAATAACAC 5365 Query 93673 AAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 ||| | || || || |||| || |||||| Sbjct 5364 AAATCTATCTTTATTCTCCTTTAATATTGGCTCT 5331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556852252186720