Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq79 179 3e-40 seq57 172 5e-38 seq1179 163 2e-35 seq778 150 2e-31 seq298 131 1e-25 >seq79 Length=61457 Score = 179 bits (198), Expect = 3e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||||||||| || ||||| |||| |||||||| ||| | | Sbjct 11209 ATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTCT 11150 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||||||||||| || ||||| |||||||||||| Sbjct 11149 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 11090 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| ||||| ||| | ||| | || || |||||| Sbjct 11089 CAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAAC 11030 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||||||||| | ||||| || Sbjct 11029 ATCCAAAAAGAATCCACTCTTCATTTGGT 11001 Score = 163 bits (180), Expect = 2e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||||||||| |||||||| |||| |||||||| ||| | | Sbjct 10753 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 10694 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || |||||||||||||| || ||||| |||||||||||| Sbjct 10693 GATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 10634 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| ||||| ||||| || || || | || || |||||| Sbjct 10633 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTACAAC 10574 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||||||||| || | ||||||||| Sbjct 10573 ATCCAAAAAGAATCTACTCTCCATTTAGTT 10544 Score = 161 bits (178), Expect = 8e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || || |||||||| | ||||||||||| ||| | Sbjct 10525 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGTTCA 10466 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| |||||||||||||| || |||||||||||||||||| Sbjct 10465 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATTCCACCCGATCAA 10406 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || || || || ||| || || | || ||||||||| Sbjct 10405 CAACGTTTAATCTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTTTATCTGATTACAAC 10346 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | |||||||| Sbjct 10345 ATCCAAAAAGAATCTACTCTCCATTTAGT 10317 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || || ||||| || | || |||||||| ||| | | Sbjct 10297 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACCCTTGAAGTCGAAGGCTCT 10238 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| |||||||| ||||| ||||| |||||||||||| Sbjct 10237 GATACCATTGAAAACGTTAAGACAAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 10178 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| ||||| ||||| || || || | || || || ||| Sbjct 10177 CAAAGACTCATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 10118 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| |||||||| | |||||||| Sbjct 10117 ATTCAAAAGGAATCCACTCTCCATTTAGT 10089 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || || ||||| || | ||||||||||| ||| | Sbjct 10981 ATGCAAATTTTCGTCAAAACCTTGACTGGTAAGACTATTACTCTTGAAGTCGAAGGTTCA 10922 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || |||||||| || ||||| |||||||||||| Sbjct 10921 GACACCATTGAAAACGTTAAGACCAAGATCCAAGACAAAGAAGGTATCCCACCCGATCAA 10862 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| ||||| ||| | || | || || |||||| Sbjct 10861 CAACGTTTAATTTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAC 10802 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | |||||||| Sbjct 10801 ATCCAAAAAGAATCTACTCTTCATTTAGT 10773 >seq57 Length=71319 Score = 172 bits (190), Expect = 5e-38 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||||||| | || |||||||| | ||||||||||| ||| | | Sbjct 43642 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACTCTTGAAGTAGAAGGCTCA 43583 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| |||||||||||||| || ||||| |||||||||||| Sbjct 43582 GACACCATTGAAAATGTTAAAACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCAA 43523 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || |||||| || || | || || |||||| Sbjct 43522 CAACGTTTAATCTTTGCTGGTAAACAATTGGAGGATGGTCGTACTTTATCTGACTACAAC 43463 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| ||||| || | ||||||||| Sbjct 43462 ATCCAAAAGGAATCTACTCTCCATTTAGTT 43433 Score = 165 bits (182), Expect = 7e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||||||| | || |||||||| | || |||||||| ||| | Sbjct 44326 ATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGTCGAAGGTTCT 44267 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || |||||||| ||||| ||||| |||||||||||| Sbjct 44266 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 44207 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || ||||| ||||| ||| | || | || || ||||| Sbjct 44206 CAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTACAAT 44147 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||||||||||||||| | |||||||| Sbjct 44146 ATTCAAAAAGAATCCACTCTTCATTTAGT 44118 Score = 158 bits (174), Expect = 1e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || |||||||| | ||||||||||| ||| | | Sbjct 44098 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACTCTTGAAGTCGAAGGCTCA 44039 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||||||||||| || |||||||||||||||||| Sbjct 44038 GACACTATTGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43979 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| ||||| ||||| ||| | || | || ||||||||| Sbjct 43978 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 43919 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || |||||||||||||| | ||||||||| Sbjct 43918 ATCCAAAAAGAATCCACTCTTCATTTAGTT 43889 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || ||||| || | || || ||||| ||| | Sbjct 43414 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACCCTCGAAGTCGAAGGTTCT 43355 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || |||||||| ||||| ||||| |||||||||||| Sbjct 43354 GATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCCACCCGATCAA 43295 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || ||||| ||||| ||||| ||| || ||| | || |||||||| Sbjct 43294 CAACGTTTAATTTTCGCCGGTAAACAATTAGAAGATGGACGTACCTTGTCTGATTACAAT 43235 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||||||||| || | ||||||||| Sbjct 43234 ATCCAAAAAGAATCTACTCTCCATTTAGTT 43205 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| ||||| || || || ||||| || | ||||||||||| ||| | Sbjct 43870 ATGCAAATTTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTTGAAGTTGAAGGTTCT 43811 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || ||||||||||| || |||||||||||||||||| Sbjct 43810 GATACCATTGAAAACGTTAAAACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43751 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || ||||| ||||| ||||| || || || | || || || ||| Sbjct 43750 CAAAGACTTATTTTCGCCGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43691 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| ||| | |||||||| Sbjct 43690 ATCCAAAAAGAATCTACCCTCCATTTAGT 43662 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || |||||||| | || |||||||| ||| | | Sbjct 43186 ATGCAAATTTTCGTCAAGACCTTGACTGGTAAAACCATTACCCTTGAAGTCGAAGGCTCT 43127 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || ||||||||||| || |||||||||||||||||| Sbjct 43126 GATACCATCGAAAACGTCAAGACCAAGATTCAAGACAAAGAAGGTATTCCACCCGATCAA 43067 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| ||||| || || || | || || || ||| Sbjct 43066 CAACGTTTAATTTTTGCTGGTAAACAATTAGAAGACGGTCGTACTTTATCTGACTATAAC 43007 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| ||||| ||| | ||||||||| Sbjct 43006 ATCCAAAAGGAATCTACCCTCCATTTAGTT 42977 >seq1179 Length=2421 Score = 163 bits (180), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| ||||| |||||||| |||| |||||||| ||| | | Sbjct 1975 ATGCAAATTTTCGTTAAAACCTTAACTGGTAAAACCATCACCCTTGAAGTTGAAGGCTCT 2034 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | |||| ||||||||||| || || ||||| |||||||||||| Sbjct 2035 GATACAATTGATAACGTCAAGACTAAAATTCAAGATAAAGAAGGTATCCCACCCGATCAA 2094 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || || | || | || || |||||| Sbjct 2095 CAACGTTTAATCTTTGCAGGTAAACAATTGGAAGACGGTAGAACTTTGTCTGACTACAAC 2154 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||||||||||||||| | ||||||||| | |||| Sbjct 2155 ATTCAAAAAGAATCCACTCTTCATTTAGTTCTCAGATT 2192 Score = 161 bits (178), Expect = 8e-35 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||| || |||||||| |||| |||||||| ||| || Sbjct 2203 ATGCAAATTTTTGTCAAGACTTTGACTGGTAAAACTATCACCCTTGAAGTTGAAGGTTCC 2262 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || || |||||||||||||||||| Sbjct 2263 GATACAATTGATAATGTTAAAACTAAAATTCAAGATAAAGAAGGTATTCCACCCGATCAA 2322 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || ||||| || || ||| | ||| | || || || ||| Sbjct 2323 CAAAGACTTATTTTTGCAGGTAAACAATTGGAAGATGGTAGAACCTTATCTGACTATAAC 2382 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||||||||||||||| Sbjct 2383 ATTCAAAAAGAATCCAC 2399 >seq778 Length=8042 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || |||||||| ||||| ||||| || ||||||| ||||| ||| Sbjct 4921 AACATGCAAATCTTCGTTAAAACCTTAACTGGTAAGACCATCACTCTCGAAGTCGAAGGT 4862 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | |||| || || |||||||| || ||||| ||||||||| Sbjct 4861 TCTGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCCGAT 4802 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||| | || |||||||| ||||| ||||| ||| | || | || || ||| Sbjct 4801 CAACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACTTTATCTGACTAC 4742 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| ||||||||||| ||| | || |||||| Sbjct 4741 AACATCCAAAAAGAATCAACCCTCCACTTAGTT 4709 >seq298 Length=27992 Score = 131 bits (144), Expect = 1e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 |||||||| | || || ||||| ||| |||||||| | || || |||| ||| Sbjct 13374 GGTAAAACTATTACCCTCGAAGTTGAAGGTTCCGATACCATCGAAAATGTCAAGGCTAAA 13315 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || |||||||| || ||||| || |||||||||||| | ||||| ||||| || ||||| Sbjct 13314 ATCCAAGACAAAGAAGGTATCCCCCCCGATCAACAAAGACTTATCTTTGCTGGTAAACAA 13255 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 ||||| || || || | |||||||||||||| ||||||||||| ||| | || ||| Sbjct 13254 TTAGAAGACGGTCGTACTTTATCCGATTACAACATCCAAAAAGAATCTACCCTTCACTTA 13195 Query 22426 GT 22427 || Sbjct 13194 GT 13193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721718245820