Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq433 102 2e-16 seq112 102 2e-16 seq1202 100 6e-16 seq329 100 6e-16 seq235 100 6e-16 seq65 100 6e-16 seq43 100 6e-16 seq1 100 6e-16 seq342 86.0 1e-11 seq116 86.0 1e-11 seq29 86.0 1e-11 seq398 84.2 4e-11 seq167 84.2 4e-11 >seq433 Length=20731 Score = 102 bits (112), Expect = 2e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 20561 GAAAGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTC 20620 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 20621 GAGCCCCACGTTGGGC 20636 >seq112 Length=51867 Score = 102 bits (112), Expect = 2e-16 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 20903 GAAAGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTC 20962 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| | |||| Sbjct 20963 GAGCCCCACGTTGGGC 20978 >seq1202 Length=2188 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1838 AGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 1779 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1778 CCCCACGTTGGGC 1766 >seq329 Length=25976 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 20928 AGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 20987 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 20988 CCCCACGTTGGGC 21000 >seq235 Length=35100 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 19455 AGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 19514 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 19515 CCCCACGTTGGGC 19527 >seq65 Length=67928 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 6852 AGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 6911 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 6912 CCCCACGTTGGGC 6924 >seq43 Length=77804 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 65955 AGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 66014 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 66015 CCCCACGTTGGGC 66027 >seq1 Length=175892 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 137508 AGCCCGGCTAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAG 137567 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 137568 CCCCACGTTGGGC 137580 >seq342 Length=25153 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||| | |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 235 ATAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCG 176 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 175 AGCCCCCCTTTGGGC 161 >seq116 Length=51473 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||| | |||||||||||||||||||| || || |||| || ||||||| ||||||| Sbjct 13668 ATAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCG 13727 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 13728 AGCCCCCCTTTGGGC 13742 >seq29 Length=85636 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || |||||| | |||||||||||||||||||| || || |||| || ||||||| ||||| Sbjct 84888 AGCTAGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTT 84947 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||| | | |||| Sbjct 84948 CGAGCCCCCCTTTGGGC 84964 >seq398 Length=22523 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||||| || || |||| || ||||||| ||||||||| Sbjct 155 AGCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGAG 96 Query 142563 CCCCACATCGGGCAGA 142578 |||| | | |||| || Sbjct 95 CCCCCCTTTGGGCGGA 80 >seq167 Length=42681 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | |||||||||||||||||||| || || |||| || ||||||| |||||||||| Sbjct 480 GCCCAGATAGCTCAGTCGGTAGAGCGCAAGGCTTTTAACCTTGTGGTCGGGGGTTCGAGC 421 Query 142564 CCCACATCGGGCAGAA 142579 ||| | | |||| ||| Sbjct 420 CCCCCTTTGGGCGGAA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820628272748