Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq57 111 1e-19 seq79 100 2e-16 >seq57 Length=71319 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 21824 ATAGTGCAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAAC 21883 ||||| || |||||||| ||| ||||||| | || || |||||||||||| | ||| Sbjct 44336 ATAGTACATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATTACCCTTGAAGT 44277 Query 21884 GGAAGCCGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACC 21943 |||| | || || | | || | ||| || ||| ||||| || ||| | || Sbjct 44276 CGAAGGTTCTGATACCATCGAAAATGTCAAGACCAAGATTCAAGATAAGGAAGGTATCCC 44217 Query 21944 TGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGC 22003 | ||||| |||||||| |||||||| |||||| |||||||| | |||| | | Sbjct 44216 ACCCGATCAACAAAGACTTATTTTTGCTGGTAAACAATTAGAAGATGGTAGAACTTTATC 44157 Query 22004 CGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 || ||||||||||| || ||||| ||||||||| Sbjct 44156 TGACTACAATATTCAAAAAGAATCCACTCTTCAT 44123 >seq79 Length=61457 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||| ||||| ||||||||||| ||| | ||| |||| | | Sbjct 11210 AATGCAAATTTTTGTTAAAACTTTAACTGGCAAAACCATCACCCTTGAAGTCGAAGGCTC 11151 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||| || ||||| ||| | || | || Sbjct 11150 TGATACTATTGAAAATGTAAAGACTAAAATTCAAGACAAAGAAGGTATCCCACCCGATCA 11091 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||| || |||||| |||||||| | ||| | | || ||||| Sbjct 11090 ACAACGTTTAATCTTTGCCGGTAAACAATTAGAAGATGGTAGAACCTTATCTGACTACAA 11031 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| ||||||||| |||| | | ||| |||| || Sbjct 11030 CATCCAAAAAGAATCCACTCTTCATTTGGTCCTTAGATTAAGAGGTGG 10983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358119440214712