Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq697 168 1e-36 seq2 159 7e-34 >seq697 Length=10231 Score = 168 bits (186), Expect = 1e-36 Identities = 303/437 (69%), Gaps = 17/437 (4%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 ||||||| ||||| ||| ||| || || |||||||| || || ||||| | ||| |||| Sbjct 5519 TGGCCTTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCTTGCCACAAAGTTTATGA 5578 Query 42484 AAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || || | || ||||| | || ||||| |||||||| || ||||| || || Sbjct 5579 GTGAAGTTCA--AATTCCAGAGGCTAGATGTTTCTATGGCTTCCAAATTGCCATTGAAAA 5636 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | || || ||| ||| || || |||| ||||||| || ||| || Sbjct 5637 CATCCATTCAGAGACCTACAGTCTCTTGATCGACACCTACATCCAAGACAGCGTGGAAAA 5696 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 | | || ||||| ||||| ||||| || ||||| | || |||||||| |||||||| Sbjct 5697 GAGCAAACTATTCAACGCCATCGAGACCATCCCCTGTGTGAAAAAGAAGGCCGACTGGGC 5756 Query 42662 GCTCAACTGGATCGAGAGTCCCGAC-GCAA--CGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 | | |||||| || || |||| | || | ||| | | || |||||| | Sbjct 5757 ATTGAGATGGATCA------CCAACAGCAAATCATTTGCCGAACGTTTAGTTGCCTTTGC 5810 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA 42778 |||||||||||| ||||| ||| ||| || ||| ||||| ||||||||| || Sbjct 5811 CGCCGTCGAGGGTATCTTTTTCAGCGGCAGTTTTTGCTCTATCTTTTGGCTCAAG--AAA 5868 Query 42779 GGTG--TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 ||| | ||||||||| | || ||||| ||||| |||||||| | |||||||| || Sbjct 5869 CGTGGTTTGATGCCCGGTTTGACATTCTCTAACGAGCTCATCAGTCGTGACGAGGGTCTC 5928 Query 42837 CATAGGGACTTTGCCTG 42853 || | |||||||||| Sbjct 5929 CACTGCAACTTTGCCTG 5945 >seq2 Length=160969 Score = 159 bits (176), Expect = 7e-34 Identities = 672/1047 (64%), Gaps = 38/1047 (4%) Strand=Plus/Minus Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 || ||||| ||||| || || || | ||| | || ||||||||||||| | ||||||| Sbjct 39331 ATAAAGACATCGGCGAGACCTTGGATGCCAAGACCAATGGGTCTGTGTCTCATGTTGGAC 39272 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 | | | ||||||||| || || |||| | ||| || | ||||||||| || |||| Sbjct 39271 ACCTTTGATTCGGGCACTGGATAGTAGTTTCTGTCAATGATCTTGTTGAGATTCTTGGTG 39212 Query 244595 ATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654 || | | || || || | ||| ||| || || | || | || | || Sbjct 39211 ATTACCTTGGTTACCTCATAGAGATGTTGATGGTCATATTCCTTT---TCTTTGGGGTTG 39155 Query 244655 GTG-ATCCTC--------ACAAACTCGTTGAGGGCGACGCT-----GGCCAGGTTGCAGA 244700 ||| | ||| |||| | ||| ||| | || ||||| ||||| | Sbjct 39154 GTGGAACCTTGTTTTTGGACAACATATTTG--GGCAAAGCAATAGAGGCCAAATTGCAAA 39097 Query 244701 CGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGA 244760 ||||||| ||||| | |||||| ||||| || || ||||| ||||| |||| | Sbjct 39096 CGGCCACTTCCTCTGGCGAGGTGTATTGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAA 39037 Query 244761 TGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGG 244820 ||||||| |||| || |||||||| || | |||||||| || |||||||| ||||| | Sbjct 39036 TGGTGCCAAGGTTTTGTTGATTGGATTTTGAATTGCAGGCATCTTTGTAGAGGATGAATG 38977 Query 244821 GCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCG 244880 | || || |||| ||||| |||| | | ||||||||| || |||| | Sbjct 38976 GGGTACCAGTTTCGATTTGGGCTTCGAGAATGGCAAACCAGAGGTCTTGGGCTTTGATCA 38917 Query 244881 TCCT----GCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGG 244936 | || || || | || ||||| || || || ||||| | Sbjct 38916 CACGCTTGGCAAGATCTGGTGTG-GCTTCGTATTGGAGATAGAGTTTTCTAAACTCTTCG 38858 Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCC 244995 | | |||| | | ||| ||| | || ||| || | ||| ||| ||| || Sbjct 38857 CTATGGCACTCGGCCAAGCCAGGGG-CTTCGTTGGGACAAAAGAGGGACCAATCGGCGTT 38799 Query 244996 GTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGT 245055 | || ||| || | ||| |||||||| || ||||||||| | |||||||| |||| Sbjct 38798 TTGCTCGACTCTTTCCATAAAGAGGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGC 38739 Query 245056 CCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTG 245115 ||| || || ||| |||||| ||| || | ||| ||||| | ||| |||| Sbjct 38738 TCTCATTTCCTCTTTGCCGTGGTTCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTG 38679 Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCAT 245175 ||| ||||||| |||||| || | ||| || | |||| || || ||||| || Sbjct 38678 CCATGGCTCCAAGTAGACGGCAAAGGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTA 38619 Query 245176 CCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 || | || | | || |||| || || | || || || ||||| || |||||||| Sbjct 38618 TCTGGC-AGTGTCATTAAAGACACGAAGCATGGGGACAATACCGTTGGATGTGCCGTTGG 38560 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC-ATGCCTAGTCCGCCG 245293 |||| ||| || || || | |||| ||| ||| | | || || | || ||| Sbjct 38559 TGCCACGGATATAACTGCTGCTGGCTCTGATCTTG-TGACAGGCGATACCAATGCCACCG 38501 Query 245294 GCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCC 245353 || || ||||||||| || |||| ||||| || || || || ||| Sbjct 38500 GCAGATTTACTGATGAGGGCACACTGTTTGAGAGTGTCATAGATACCGTCTATCGAGTCT 38441 Query 245354 GACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAAC 245413 |||||| | | || || || |||| ||| || ||||| | | |||||| || Sbjct 38440 TCCTTCATTTGCACGAGGAAACAACTTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAG 38381 Query 245414 AGAGTGGGGCTGGCGTGGGTAAAGTAGC----GGCTCGAGAGGAACCCGTACGTCTGGAG 245469 || |||||| |||||||||||||| ||| |||| ||||| |||| |||| ||| Sbjct 38380 AGGGTGGGGGTGGCGTGGGTAAAG-AGCTTTTGGCT---GAGGAGATCGTAGGTCTCGAG 38325 Query 245470 CAGAGCGTCGATGTTGTCGCCGTGGAT 245496 ||||| | | |||||||||||| Sbjct 38324 AGCGGCGTCCAAATCGTCGCCGTGGAT 38298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324704393280