Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq697 136 9e-27 seq37 113 1e-19 seq41 102 2e-16 seq98 86.0 1e-11 >seq697 Length=10231 Score = 136 bits (150), Expect = 9e-27 Identities = 543/839 (65%), Gaps = 28/839 (3%) Strand=Plus/Plus Query 242893 GATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCT 242952 ||||| ||| | ||||| || | || | || | |||||||| |||| ||| || | Sbjct 5389 GATATATGGAAGATGTACAAACAAGCTGAAGCCAGTTTTTGGACAGCCGAAGAAATTGAT 5448 Query 242953 CTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATC 243012 || |||| || ||| ||| | ||||| | ||||| |||||||| ||||||| Sbjct 5449 TTGGCACCAGATCTCAACGATTGGAACAAGAAATTAAATGATAACGAACGTTATTTCATA 5508 Query 243013 AAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCAGACC 243072 | || | | |||||||| | | ||||||||||| | |||||||| || Sbjct 5509 TCCAATGTTTTGGCCTTTTTCGCTGCCAGTGATGGTATTGTCAATGAAAATCTTGCCACA 5568 Query 243073 AACTTTAGTGTG-GAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATT 243131 || |||| || | ||||| |||||||||| | || |||| | ||||| Sbjct 5569 AAGTTTA-TGAGTGAAGTTCAAATTCCAGAGGCTAGATGTTTCTATGGCTTCCAAATTGC 5627 Query 243132 CAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGA--- 243188 || ||| |||||||| || || ||| | |||||| | || ||| Sbjct 5628 CATTGAAAACATCCATTCAGAGACCTACAGTCTCTTGATCGACACCTACATCCAAGACAG 5687 Query 243189 --TGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAAC 243246 || | |||||| || || ||| |||||||||| | ||| || || | || Sbjct 5688 CGTGGAAAAGAGCAAA-----CTATTCAACGCCATCGAGACCATCCCCTGTGTGAAAAAG 5742 Query 243247 AAGGCAAAATGGGCTCAGAAGTGGCTAGAACC--CGGTAAATCATTTGCTGAGCGTCTCG 243304 ||||| | ||||| || ||| | ||| | | ||||||||||| || ||| | | Sbjct 5743 AAGGCCGACTGGGCATTGAGATGGATC--ACCAACAGCAAATCATTTGCCGAACGTTTAG 5800 Query 243305 TCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTC--CGGGAGTTTCTGCGCCATCTTTTG 243362 | |||| | ||| || |||| ||| ||||| ||| ||||| ||| | |||||||| Sbjct 5801 TTGCCTTTGCCGCCGTCGAGGGTA-TCT-TTTTCAGCGGCAGTTTTTGCTCTATCTTTTG 5858 Query 243363 GCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGA 243422 ||| ||| ||| ||||||| || | | ||||||||| |||||||||| || Sbjct 5859 GCTCAAGAAACGTGGTTTGATGCCCGGTTTGACATTCTCTAACGAGCTCATCAGTCGTGA 5918 Query 243423 CGAGGGCCTTCAC--CAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTA 243480 |||||| || ||| |||| || | | |||| || ||| | ||||| || Sbjct 5919 CGAGGGTCTCCACTGCAAC--TTTGCCTGTTTGTTGTACTCCAAGTTGGTCAACAAACT- 5975 Query 243481 CCATTCGAA-ACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCAT 243539 | || | || || || || ||||||| ||| || |||| |||||| || || | Sbjct 5976 CGATGCCAAGACCATCGAAACCATCATCAGAGACGCCGTTGCCTGCGAAAAAGAGTTTGT 6035 Query 243540 TTGCGACGCTATTCCATGCCGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACA 243598 || ||| | |||| | || ||| ||||| |||||||| |||| |||||||| Sbjct 6036 CTGTGACAGTCTTCC-CGTCGACTTGATTGGTATGAACTCGCGTTCCATGTCACAGTACA 6094 Query 243599 TCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCA 243658 | ||||| |||||| | | || | | || || || | || | |||||| | Sbjct 6095 TTGAATTTTGTGCCGACAGATTACTCTACACCCTCGGCTACAAAAAGATCTACAACGCTC 6154 Query 243659 AGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAA 243717 || || |||| | ||||| | ||||| || ||| | ||||| ||||| |||||| Sbjct 6155 CCAATCCATTTGATTGGATGGAAATGATTTCCCTCCAAAGAAAAACAAACTTTTTCGAA 6213 >seq37 Length=80241 Score = 113 bits (124), Expect = 1e-19 Identities = 244/365 (67%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 68421 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 68480 ||| | ||||| ||||| ||||| |||| ||| | || | || || || ||||| || Sbjct 19483 GAGCTCTATGGCAAAGTACAAGAGGTTCCACAGTCTGAGACCACCCCATTCTATCCCCGT 19542 Query 68481 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCG 68540 || |||| || || ||| | || || ||||||| || || ||||| | Sbjct 19543 TCACCATACGCCGTCGCCAAGCAATTTGCCTACTGGATCTTGGTCAACTATCGTGAAGCC 19602 Query 68541 TATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCAT 68600 || |||||||| | |||||| ||| || ||||||||| ||| | ||||||| Sbjct 19603 TACAACATGTACGCCTGCAACGGTATTCTCTTTAATCACGAGTCTCCAAGAAGAGGCCCC 19662 Query 68601 CAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAA 68660 || || |||||||||||||| | | || || |||| ||| | || || Sbjct 19663 ACTTTTGTCACTCGTAAAATCACCAGATTCGTGGCACGTATTGCTCTTGGCCACAAAGAA 19722 Query 68661 TGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTA 68720 | | |||||||| || || ||||| || | |||||||| |||| || ||||| || Sbjct 19723 GTCCTCTATCTCGGCAACATCAATGCCCAACGTGATTGGGGTCATGCCAAAGATTATGTC 19782 Query 68721 GAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGG 68780 || | |||||| | ||| | |||||||| | || || || ||||| | || || || Sbjct 19783 GAGGGTATGTGGCTCATGTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGT 19842 Query 68781 AAAAC 68785 |||| Sbjct 19843 GAAAC 19847 >seq41 Length=78064 Score = 102 bits (112), Expect = 2e-16 Identities = 242/366 (66%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 68421 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 68480 ||| | ||||| || || ||||| |||| || | || | || || || ||||| || Sbjct 28499 GAGCTCTATGGCAAGGTTCAAGAGGTTCCACAATCCGAGACCACCCCATTCTATCCCCGT 28440 Query 68481 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCG 68540 || |||| | |||| || | || || ||||||| || || ||||| | Sbjct 28439 TCACCATACGCTCTTGCCAAACAATTTGCCTACTGGATCTTGGTCAACTATCGTGAAGCC 28380 Query 68541 TATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCAT 68600 || |||||||| | |||||| ||| || |||||||| ||| | ||||| | Sbjct 28379 TACAACATGTACGCCTGCAACGGTATTCTCTTTAATCACGAATCTCCAAGAAGAGGTCCC 28320 Query 68601 CAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAA 68660 || || |||||||||||||| | | || || |||| |||| | || || Sbjct 28319 ACTTTTGTCACTCGTAAAATCACTAGATTCGTGGCACGTATTGCTCTTGGTCACAAAGAA 28260 Query 68661 TGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTA 68720 | |||||||| || || ||||| || | |||||||| |||| || || || || Sbjct 28259 GTACTCTATCTCGGCAACATCTATGCCCAACGTGATTGGGGCCATGCCAAAGACTATGTC 28200 Query 68721 GAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGG 68780 |||| ||||||| | ||| | |||||||| | || || || ||||| | || || || Sbjct 28199 GAAGGAATGTGGCTCATGTTACAACAAGACAAACCAGAAGATTATGTTTTGGCCACCGGT 28140 Query 68781 AAAACA 68786 ||||| Sbjct 28139 GAAACA 28134 >seq98 Length=57420 Score = 86.0 bits (94), Expect = 1e-11 Identities = 197/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 297431 AGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCG 297490 || ||||||||||| |||| || || ||| ||| |||||| || | | | ||| Sbjct 16836 AGCTTTGTGAAAATGTATCTTGGGCTAGCGCAATCTGAACCACCTTGAAGACGAGTACCA 16777 Query 297491 AACTGGCCCTCCGGCAACAACCAGTTGA-TGTTATTGCTTCCGACATAATCCTGTGCAAG 297549 || || || |||||| | ||| || ||||||| ||| ||||| ||||| | Sbjct 16776 AATTGACCA-CCGGCATATAATAGTGGAATGTTATTTGATCCAACATAGCTTTGTGCCAT 16718 Query 297550 GTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAAC 297609 || || || || | | || || ||||| |||||||||||||| |||| || ||||| Sbjct 16717 CTTTACAATTGTAGCATTGAGGGAAGCTTCACCATGGTGATAGGCAGTATGTTCAGCAAC 16658 Query 297610 GTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAATA 297669 ||||| || || ||||| || | || | || | || | |||||| || ||| Sbjct 16657 ATAACCAGACAATTGAGCAACTTTAATTTCAGAGGTTAGCTTTCTCTTGAAGCATGCATA 16598 Query 297670 TATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCG 297723 | | ||| | ||| || |||| |||||||| || || || ||||| || Sbjct 16597 CAATATTTTTCTTTGGCCTGGCTTGAGACCATCAATGATGGAGGGTATGCTACG 16544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102862647561800