Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 262 5e-65 seq171 82.4 9e-11 >seq2 Length=160969 Score = 262 bits (290), Expect = 5e-65 Identities = 1194/1861 (64%), Gaps = 79/1861 (4%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||| |||||||| || |||||||| |||| ||||||| || | |||||||| | Sbjct 40012 CGGAGATAGTACATACCGGTCTTGAGACCCTTTTTCCAGGAGTAAAAGTGCATCGATGTG 39953 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||||| | || || | || |||| || | || ||| ||| || || ||| Sbjct 39952 AGTTTGGAAAAGGTGGGCTCAGCAATAAAGACATTGAAGCTCTGGCTTTGGTCAATAAAG 39893 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||||| || || ||||| ||||| | | ||| | |||||||| || ||| | Sbjct 39892 GCACCACGCTCGGCGGCCATGTCAATGAGGGTTCTTTGACGA-ATTTCCCAGACTGTTTT 39834 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 |||||| | || | ||| || ||||| ||| | |||| |||||| ||| | | Sbjct 39833 GTAGAGCTCTTTGAGATCGTCGGGGATTTCCTCAATATCTTGGATACTGCCTCTG---TG 39777 Query 113836 GACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 113892 || |||| | | ||| || || ||||| ||||||| || ||||||| | Sbjct 39776 GAGAATGATTTGGTTCTTGATCTCTGGCGACCATAGACCAAGCTCCATGAGATCGGTGAG 39717 Query 113893 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 113952 ||| || ||||| |||| || ||||| || | || | || || |||| Sbjct 39716 GAGTTGTTTATTTACAATGGTGAATTCACCGGCCAACACACGACGACTGTAAATGTTGGA 39657 Query 113953 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCAT 114012 |||||||||||||||||||||||||| || | ||||| | |||| ||| || ||||| Sbjct 39656 TGTGTATGGCTCAAAGCACTCATTGTTTCCGAGAATTTGAGAGGTGCTGGCGGTTGGCAT 39597 Query 114013 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTC 114072 || || || | ||| ||||| | ||||| | || | || ||||||||| | | Sbjct 39596 TGGGGCAATCAAAAGACTGTTTCTAAGACCGGTGGCCTTGATCTTTTCCTTGAGTTTGGC 39537 Query 114073 CCAGTCGTA--GTTGAGCTTT-GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 114129 |||||| | || ||| | || | ||| ||||| ||| | ||||||||||| | Sbjct 39536 CCAGTCCCAACGTGGAGATGGAGTGACACCC---CACATGTCATATTGGAGGATACCCTT 39480 Query 114130 GGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCG---GA 114186 |||||||| || || ||||| || || || | || | | | ||||| || || Sbjct 39479 AGAGGCTGGTGAGCCTTCAAAGGTTTCATAGGCACCGTGGGCAGCAGCCAACTCATTAGA 39420 Query 114187 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 114246 | || ||| || || ||| || || || ||| | ||| | || |||| Sbjct 39419 G---GCTGTGAGAGCGGCAAAATAGATGGTTTCGGCAATCTCACGATTGAGTG---TGGC 39366 Query 114247 CTCGTCGGAA---TCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGAC 114303 || | | | ||||| | | || ||||| ||||| ||||||||||||| Sbjct 39365 AGCGCCAGTAGAGTCAAAAGGTAAACGAAGGGCGATAAAGACATCGGCGAGACCTTGGAT 39306 Query 114304 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACT--TTCGAG-CGGTCTCCACGGGATA 114360 || || ||||| || | |||||||| || ||| || || ||| | || ||||| Sbjct 39305 GCCAAGACCAATGGGTCTGTGTCTCATGTTGGACACCTTTGATTCGGGC---ACTGGATA 39249 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 | || || || || | | | || ||||| ||||||| ||||| || | |||| || Sbjct 39248 GTAGTTTCTGTCAATGATCTTGTTGAGATTCTTGGTGATTACCTTGGTTACCTCATAGAG 39189 Query 114421 CTTTTCGTAATCAAAAC---------------TGC--GAGTCTCTTCATTG----ACATA 114459 | || | ||| | || || || | ||| ||||| Sbjct 39188 ATGTTGATGGTCATATTCCTTTTCTTTGGGGTTGGTGGAACCTTGTTTTTGGACAACATA 39129 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT-TATCA--GTGTA 114516 || || | || || || |||| ||| || || || | | |||| | | ||||| Sbjct 39128 TTTGGGCAAAGCAATAGAGGCCAAATTGCAAAC---GGCCACTTCCTCTGGCGAGGTGTA 39072 Query 114517 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 114576 | | ||||| || || | || || ||||||||| | ||| | |||||| || Sbjct 39071 TTGGACGATTTCTGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGA 39012 Query 114577 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 114636 |||| || || ||||| ||||| || ||| |||| || || || || |||||| | Sbjct 39011 TTTTGAATTGCAGGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTC 38952 Query 114637 GAGAATAGCCTTCCAGACATCGGCGGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCCT--- 114692 |||||| || ||||| || |||| | || || ||||| | | | | Sbjct 38951 GAGAATGGCAAACCAGAGGTCTTGGGCTTTGATCACACGC-TTGGCAAGATC-TGGTGTG 38894 Query 114693 -CCTCGTACTTTGTG-TAGAGGGCTTCAAACTCTTCACCCACGGC-CTCTGAGAGCCCTG 114749 | ||||| || | | ||||| | ||||||||| | | ||| ||| | | || | Sbjct 38893 GCTTCGTA-TTGGAGATAGAGTTTTCTAAACTCTTCGCT-ATGGCACTCGGCCAAGCCAG 38836 Query 114750 GTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGA 114809 | || | | || || ||||| ||||| | | | ||| || | | ||| |||| Sbjct 38835 GGGCTTCGTTGGGACAAAAGAGGGACCAATCGGCGTTTTGCTCGACTCTTTCCATAAAGA 38776 Query 114810 GGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 114869 |||| || |||||| || | ||||| || | | ||| || | || || | Sbjct 38775 GGTCACTGACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGT 38716 Query 114870 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGA 114929 | ||| || | ||| || | ||||| |||||||| || |||| ||| || || | Sbjct 38715 TCTTTTTCAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAA 38656 Query 114930 TTGACCCCTTACGACGACCA--GCCT-GGTTTACATACCTCGCTGTGGCATTAAATACGC 114986 | ||||| | ||| |||| ||| || || || || ||| ||||||| || | Sbjct 38655 AGGCACCCTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACAC 38596 Query 114987 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGG 115046 ||||||| || | ||||| | ||| ||| || || || || ||| | | ||| Sbjct 38595 GAAGCATGGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGG 38536 Query 115047 CTCTGACATCATG-GATGTGC-ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 115104 |||||| || || || || |||||||| || || || | || ||| | || || Sbjct 38535 CTCTGA--TCTTGTGACAGGCGATACCAATGCCACCGGCAGATTTACTGATGAGGGCACA 38478 Query 115105 CTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGC 115163 || ||||| || | ||||| ||||| |||||||| |||| |||||| | ||||| | Sbjct 38477 CTGTTTGAGAGTGTCATAGATACCGTCTATCGAGTCTTCCTTCATTTGC-ACGAGGAAAC 38419 Query 115164 AGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGA 115223 | || ||||| || || | |||||||| | ||| |||||||| || || |||||| | | Sbjct 38418 AACTTGACATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAA 38359 Query 115224 ACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAA 115283 | | |||| | |||||||||||| | ||||| | || || ||||| | Sbjct 38358 AGAGCTTTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGA 38299 Query 115284 TACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC 115343 | || | |||||| ||||| ||||||| |||||| || || | |||| || | Sbjct 38298 TGCCCAACGAGACACGCATTAACATGTGTTGGGGACGCTCAATGATCTGGCCATTGACTC 38239 Query 115344 TCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCTCT 115403 | || | |||||| |||| | ||||||| ||||| || || ||||| | || |||| Sbjct 38238 TTTGCAAGTAACTTCTCTCGAGTGTCTTGAAGCCAAAGAAATCATAGTCAAAATCTCTCT 38179 Query 115404 T 115404 | Sbjct 38178 T 38178 >seq171 Length=42127 Score = 82.4 bits (90), Expect = 9e-11 Identities = 169/248 (68%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 10872 TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 10931 || |||| |||||||| ||| ||| | |||||| | || | ||| | |||||| || Sbjct 37437 TAGCAAAACCATCCATTTCAACCAACAATTGATTCAAAGTGTTTTCTCTTTCATCGTTGC 37378 Query 10932 ---CGGGCATACCACCCGCACTGCGTTGCT-TACCGACGGCGTCAATTTCATCGATGAAA 10987 | | | ||||||| | | ||||| |||| | ||| |||||||||||||| || Sbjct 37377 TACCAGAGAAACCACCCTTGCCTC-TTGCTCTACCAATGGCATCAATTTCATCGATAAAC 37319 Query 10988 ACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCG 11047 || ||||| ||| ||| | || |||||| | ||| || ||||| | ||| Sbjct 37318 ACAATACATGGTGCATTCTTTTTAGCTTGTTCAAATAGATCACGTACTCTAGCTGGACCT 37259 Query 11048 ACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGAT 11107 ||||| ||| ||||||| ||||||| | | ||| | | ||| || ||||| | | Sbjct 37258 ACACCAACATACATTTCAACAAAATCTGATCCAGAAGTTGAAAAGAATGGTACGTTTGCT 37199 Query 11108 TCACCCGC 11115 ||||| || Sbjct 37198 TCACCTGC 37191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344430622240