Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 205 9e-48 >seq2 Length=160969 Score = 205 bits (226), Expect = 9e-48 Identities = 329/469 (70%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| ||||| || ||| |||| || || || |||||||| |||||||| Sbjct 38367 GCCACCCCCACCCTCTTTAACTCGGGTACACCCAACCCTCAGATGTCAAGTTGTTTCCTC 38426 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | |||| ||||| || ||| || | |||| ||||| | ||||| | Sbjct 38427 GTGCAAATGAAGGAAGACTCGATAGACGGTATCTATGACACTCTCAAACAGTGTGCCCTC 38486 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAG-TGTCCACGACGTACGTGCCAGGGGTTC 94070 ||| |||| || || || || || ||| |||| || | | | ||||| | Sbjct 38487 ATCAGTAAATCTGCCGGTGGCATTGGTATCGCCTGTC-ACAAGATCAGAGCCAGCAGCAG 38545 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 || ||||| || ||||| ||||| |||||||| | ||||| ||||| || ||||| || Sbjct 38546 TTATATCCGTGGCACCAACGGCACATCCAACGGTATTGTCCCCATGCTTCGTGTCTTTAA 38605 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 || | || | ||||| ||||| || ||||| | ||| |||||| | || || ||||| Sbjct 38606 TGACACTGCCAGATACGTCGACCAAGGCGGTGGCAAGAGAAAGGGTGCCTTTGCCGTCTA 38665 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 | ||||| |||||||| || | | || ||||| || ||||||||||||||| Sbjct 38666 CTTGGAGCCATGGCACGCCGATATTTTTGAGTTTATCGATTTGAAAAAGAACCACGGCAA 38725 Query 94251 CGATCTGGA---GAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 || ||| ||| |||||||||||||| ||||| |||||||| ||||| ||||| Sbjct 38726 AGA---GGAAATGAGAGCCAGAGACCTCTTTTACGCCCTCTGGGTCAGTGACCTCTTTAT 38782 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAA 94356 | || | |||||| ||||| ||| ||| || ||||||||||| ||| Sbjct 38783 GGAAAGAGTCGAGCAAAACGCCGATTGGTCCCTCTTTTGTCCCAACGAA 38831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494715605998880