Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Polysphondylium_20violaceum_20[genbank_20GCA_5F000277445.1_202012- 07-09] 1,228 sequences; 25,723,383 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq57 134 1e-26 seq2 132 5e-26 seq79 105 7e-18 seq778 93.3 4e-14 seq1179 89.7 5e-13 >seq57 Length=71319 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||||||||| | | || |||||||| ||||||||||| | |||||| ||||| Sbjct 43433 AACTAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAAAGTACGACCATCCTC 43492 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||||||||| | | |||||| ||| ||||| || || || |||||||||||||| | Sbjct 43493 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TT 43551 Query 138525 GATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||| ||||||| | ||| | |||||| | || || || | || | |||| Sbjct 43552 GAATTTTAGTTTTAACATTTTCAATGGTGTCTGAGCCTTCTACTTCAAGAGTAATGGTTT 43611 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| |||||||| |||||||| ||||| Sbjct 43612 TACCAGTGAGAGTTTTAACAAAAATTTGCAT 43642 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||||||||| | | | || |||||||| ||||| ||||| | |||||| ||| || Sbjct 42977 AACTAAATGGAGGGTAGATTCCTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTC 43036 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||||||||| | | | |||| ||| ||||| || || || |||||||||||||| | Sbjct 43037 TAATTGTTTACCAGCAAAAATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTC-TT 43095 Query 138525 GATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | || || || | | ||| | ||| || | || || || | || | |||| Sbjct 43096 GAATCTTGGTCTTGACGTTTTCGATGGTATCAGAGCCTTCGACTTCAAGGGTAATGGTTT 43155 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||| || || || ||||| ||||| Sbjct 43156 TACCAGTCAAGGTCTTGACGAAAATTTGCAT 43186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | | | || || ||||| ||||| ||||| | |||||| ||| || Sbjct 43662 ACTAAATGGAGGGTAGATTCTTTTTGGATGTTATAGTCAGATAAAGTACGACCGTCTTCT 43721 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||||||||||| | || || | ||||| || || || |||||||||||||| || Sbjct 43722 AATTGTTTACCGGCGAAAATAAGTCTTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 43780 Query 138526 ATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | | || ||||||| | ||| | ||| || | || || || | || | || || Sbjct 43781 AATCTTGGTTTTAACGTTTTCAATGGTATCAGAACCTTCAACTTCAAGAGTAATGGTCTT 43840 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| || || || ||||| ||||| Sbjct 43841 ACCAGTCAAGGTCTTAACGAAAATTTGCAT 43870 >seq2 Length=160969 Score = 132 bits (146), Expect = 5e-26 Identities = 571/879 (65%), Gaps = 44/879 (5%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 |||||||| |||| ||| || |||||| || || |||| | |||| || ||||| || Sbjct 39118 GCAATAGAGGCCAAATTGCAAACGGCCACTTCCTCTGGCGAGG-TGTATTGGACGATTTC 39060 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| |||||||||| ||| ||| | ||||| |||||| ||| |||||| Sbjct 39059 TGTGCAAAGGTTGCTGCTGGAAATGGTGCCAAGGTTTTGTTGATTGGATTTTGAATTGCA 39000 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAA 153772 || |||||| |||| ||| | || || || |||| ||| | ||||| || ||| Sbjct 38999 GGCATCTTTGTAGAGGATGAATGGGGTACCAGTTTCGATTTGGGCTTCGAGAATGGCAAA 38940 Query 153773 CCTATGCAGGTCCTGCGCTCG---CACCCGCT-GCCGATAGCGGCCCTCGCTCTCGTATC 153828 || ||||| || ||| ||| |||| | | | | | | | ||| |||||| Sbjct 38939 CCAG---AGGTCTTGGGCTTTGATCACACGCTTGGCAAGATCTGGTGTGGCT-TCGTATT 38884 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCC-GGGACACTGATGC 153887 | || ||| |||||| |||| | ||| ||||| | ||| ||| | | || Sbjct 38883 GGAGATAGAGTTTTCTAAACTCTTCGCTATGGCACTCGGCCAAGCCAGGGGCTTCGTTG- 38825 Query 153888 GGACACATCAGCGACCACATATCGTCG----GCGTTGACGCGTCGCATGAACAGATCCGG 153943 ||||| | || ||||| |||| || || | ||| | | ||| || || || Sbjct 38824 GGACAAAAGAGGGACCA---ATCGGCGTTTTGC-TCGACTCTTTCCATAAAGAGGTCACT 38769 Query 153944 CACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTT 154003 |||||||| ||||| | |||||| | || | ||||| ||| ||| ||| Sbjct 38768 GACCCAGAGGGCGTAAAAGAGGTCTCTGGCTCTCATTTCCTCTTTGCCGTGGTTCTTTTT 38709 Query 154004 CAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC 154063 || || || | | | || ||||||||||| || || | ||||||||| | |||||| Sbjct 38708 CAAATCGATAAACTCAAAAATATCGGCGTGCCATGGCTCCAAGTAGACGGCAAAGGCACC 38649 Query 154064 TTTACGCTTTCC---GCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCAT 154120 || | ||| || ||| || ||||||| | | | | || ||||| || | ||| Sbjct 38648 CTTTCTCTTGCCACCGCCTTGGTCGACGTATCTGGCAGTGTCATTAAAGACACGAAGCAT 38589 Query 154121 GGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCA- 154179 ||| | | ||| | | ||||||||||| | ||| | |||| || ||| | | Sbjct 38588 GGGGACAATACCGTTGGATGTGCCGTTGGTGCCACGGATATAACTGCTGCTGGCTCTGAT 38529 Query 154180 CTTGATGCA--CGTTAACGCCAATGCCGCCGCCGTACTT--TGAT-ATGGCAGCGCAGTC 154234 |||| || || || |||||||| ||| | | || |||| | |||| | | || Sbjct 38528 CTTGTGACAGGCGATA---CCAATGCCACCGGCAGATTTACTGATGAGGGCA-CACTGTT 38473 Query 154235 GCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGAC--GC-CGAGCAAGAAACA 154291 || ||| | |||| ||||| || || || | || |||| || ||| Sbjct 38472 TGAGAGTGTCAT--AGATACCGTCTATCGAGTCTTCCTTCATTTGCACGAGGAAACAACT 38415 Query 154292 CGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAA 154351 || ||| || || || | || |||| |||||||||||| | ||||| ||||| Sbjct 38414 TGA---CATCTGAGGGTTGGGTGTACCCGAGTTAAAGAGGGTGGGGGTGGCGTGGGTAAA 38358 Query 154352 CAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAAT 154411 || |||||||| | | ||| || |||| ||| | || | ||| |||||||| || Sbjct 38357 GAGCTTTTGGCTGAGGAGATCGTAGGTCTCGAGAGCGGCGTCCAAATCGTCGCCGTGGAT 38298 Query 154412 GCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 ||| | || ||| ||||| | |||||| || ||||| || Sbjct 38297 GCCCAACGAGACACGCATTAACATGTGTTGGGGACGCTC 38259 >seq79 Length=61457 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | | || || ||||| |||||||| || | |||||| || || Sbjct 10317 ACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCC 10376 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||| ||||| | | |||||| ||| ||||| || || || |||||||||||||| || Sbjct 10377 AATTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGTGGAATACCTTCTTTGTC-TTG 10435 Query 138526 ATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | |||| ||||||| | ||| | |||||| | || || || | || | ||||| Sbjct 10436 AATTTTAGTTTTAACATTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATGGTTTT 10495 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| ||||| || ||||| ||||| Sbjct 10496 ACCAGTCAAGGTTTTGACGAAAATTTGCAT 10525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||||||||| | | || || ||||| ||||||||||| | |||||| ||| || Sbjct 10544 AACTAAATGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTACGACCGTCTTC 10603 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||||||||||| | || || | ||||| || || || |||||||||||||| | Sbjct 10604 TAATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCTTTGTC-TT 10662 Query 138525 GATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||| || |||| | ||| | || || | || || || | || | |||| Sbjct 10663 GAATTTTAGTCTTTACATTTTCAATAGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTT 10722 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| | |||||| || ||||| ||||| Sbjct 10723 TACCAGTTAAAGTTTTGACGAAAATTTGCAT 10753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | | || |||||||||||||| ||||| | |||||| ||| || Sbjct 10089 ACTAAATGGAGAGTGGATTCCTTTTGAATGTTATAGTCAGATAAAGTACGACCGTCTTCT 10148 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||||||||||| | || || | ||||| || || || |||||||| || || || Sbjct 10149 AATTGTTTACCGGCGAAAATGAGTCTTTGTTGATCGGGTGGGATACCTTCCTTATC-TTG 10207 Query 138526 ATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | | ||||| |||| | ||| | ||| || | || || || | || | || || Sbjct 10208 AATCTTTGTCTTAACGTTTTCAATGGTATCAGAGCCTTCGACTTCAAGGGTAATAGTCTT 10267 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| ||||| || ||||| ||||| Sbjct 10268 ACCAGTCAAGGTTTTGACGAAAATTTGCAT 10297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 |||||||| | | || || ||||| ||||||||||| | ||| | || || Sbjct 10773 ACTAAATGAAGAGTAGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTCT 10832 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||||||||||| | | |||| ||| ||||| || || || |||||||||||||| || Sbjct 10833 AATTGTTTACCGGCAAAAATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TTG 10891 Query 138526 ATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 | || || |||| | ||| | |||||| | || || || | || | || || Sbjct 10892 GATCTTGGTCTTAACGTTTTCAATGGTGTCTGAACCTTCGACTTCAAGAGTAATAGTCTT 10951 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||||| ||||| || ||||| ||||| Sbjct 10952 ACCAGTCAAGGTTTTGACGAAAATTTGCAT 10981 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || ||||| ||||||||||| | || | || || | ||||||||||| | Sbjct 11016 GATTCTTTTTGGATGTTGTAGTCAGATAAGGTTCTACCATCTTCTAATTGTTTACCGGCA 11075 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||||| ||| ||||| || || || |||||||||||||| ||| |||| || |||| Sbjct 11076 AAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTC-TTGAATTTTAGTCTTTAC 11134 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | || || || | || | ||||| ||||| | |||||| Sbjct 11135 ATTTTCAATAGTATCAGAGCCTTCGACTTCAAGGGTGATGGTTTTGCCAGTTAAAGTTTT 11194 Query 138600 TACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 11195 AACAAAAATTTGCAT 11209 >seq778 Length=8042 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 |||||| || | | |||| || ||||| ||||||||||| | ||| | || || Sbjct 4709 AACTAAGTGGAGGGTTGATTCTTTTTGGATGTTGTAGTCAGATAAAGTTCTACCATCTTC 4768 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||||||||||| | |||||| ||| ||||| || || || |||||||||||||| Sbjct 4769 TAATTGTTTACCGGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTGTCTTG 4828 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| || || | | ||| | |||||| | || || |||| || | || || Sbjct 4829 GATCTTGGCCTTGACGTTTTCGATGGTGTCAGAACCTTCGACTTCGAGAGTGATGGTCTT 4888 Query 138585 ACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| | ||||| || || || |||||| Sbjct 4889 ACCAGTTAAGGTTTTAACGAAGATTTGCATG 4919 >seq1179 Length=2421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||||||||| | | || || ||||||||||||||||| || ||| | ||| || Sbjct 2184 AACTAAATGAAGAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCGTCTTC 2125 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | ||||||||| | | |||||| ||| ||||| || || || ||||||||||| || | Sbjct 2124 CAATTGTTTACCTGCAAAGATTAAACGTTGTTGATCGGGTGGGATACCTTCTTTATC-TT 2066 Query 138525 GATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || |||| || || | | || | || || | || || || | || | |||| Sbjct 2065 GAATTTTAGTCTTGACGTTATCAATTGTATCAGAGCCTTCAACTTCAAGGGTGATGGTTT 2006 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| | ||||| || ||||| ||||| Sbjct 2005 TACCAGTTAAGGTTTTAACGAAAATTTGCAT 1975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254782372160